SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0053929
Gene Symbol: LTBP1
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33364238C>T COSM1531679 TCGA-50-5946-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1178-5p aaGACCCTagtagtt CAGGGUCA m6b Created HHFCT_87803_cluster-12829_20_376
hsa-miR-1182 aAGACCCTagtagtt GAGGGUCU m7b Created HHFCT_87803_cluster-12829_20_376
hsa-miR-4667-5p aagaCCCCAGTagtt ACUGGGGA m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-615-5p aaGACCCCagtagtt GGGGGUCC m6b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-637 aagaCCCCAGTagtt ACUGGGGG m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-7155-5p aagACCCCAGtagtt UCUGGGGU m7b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-7704 aaGACCCCagtagtt CGGGGUCG m6b Disrupted HHFCT_87803_cluster-12829_20_376

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33364238C>A COSM4494904 CSCC-18-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4667-5p aagaCCCCAGTagtt ACUGGGGA m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-615-5p aaGACCCCagtagtt GGGGGUCC m6b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-635 aagaCCCAAGTagtt ACUUGGGC m7a Created HHFCT_87803_cluster-12829_20_376
hsa-miR-637 aagaCCCCAGTagtt ACUGGGGG m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-6774-5p aagaCCCAAGTagtt ACUUGGGC m7a Created HHFCT_87803_cluster-12829_20_376
hsa-miR-7155-5p aagACCCCAGtagtt UCUGGGGU m7b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-7704 aaGACCCCagtagtt CGGGGUCG m6b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-193a-5p AAGACCCAagtagtt UGGGUCUU m8a Created HHFCT_87803_cluster-12829_20_376
hsa-miR-4667-5p aagaCCCCAGTagtt ACUGGGGA m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-615-5p aaGACCCCagtagtt GGGGGUCC m6b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-635 aagaCCCAAGTagtt ACUUGGGC m7a Created HHFCT_87803_cluster-12829_20_376
hsa-miR-637 aagaCCCCAGTagtt ACUGGGGG m7a Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-6774-5p aagaCCCAAGTagtt ACUUGGGC m7a Created HHFCT_87803_cluster-12829_20_376
hsa-miR-7155-5p aagACCCCAGtagtt UCUGGGGU m7b Disrupted HHFCT_87803_cluster-12829_20_376
hsa-miR-7704 aaGACCCCagtagtt CGGGGUCG m6b Disrupted HHFCT_87803_cluster-12829_20_376

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33363413G>A COSM3910273 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3912-5p acttttTGGACAaga AUGUCCAU m6b Disrupted HHFCT_87802_cluster-12829_19_138
hsa-miR-3912-5p acttttTGGACAaga AUGUCCAU m6b Disrupted HHFCT_87802_cluster-12829_19_138

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33361507A>G COSM4093968 TCGA-CG-5721-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-148b-5p ggtgAGAACTataaa AAGUUCUG m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-3168 ggtgAGAACTataaa GAGUUCUA m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-6874-3p ggtgAGAACTataaa CAGUUCUG m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-7705 ggtgaGAGCTATaaa AAUAGCUC m7b Created HHFKP_81083_cluster-12829_27_10
hsa-miR-1229-3p GGTGAGAGctataaa CUCUCACC m8a Created HHFKP_81083_cluster-12829_27_10
hsa-miR-148b-5p ggtgAGAACTataaa AAGUUCUG m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-3168 ggtgAGAACTataaa GAGUUCUA m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-6874-3p ggtgAGAACTataaa CAGUUCUG m6b Disrupted HHFKP_81083_cluster-12829_27_10
hsa-miR-7705 ggtgaGAGCTATaaa AAUAGCUC m7b Created HHFKP_81083_cluster-12829_27_10
Mutation Mutation ID Sample Name Cancer Type
chr2:g.33360736G>T COSM4933944 TCGA-CC-A5UE-01 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33360731G>A COSM1690462 YUKLAB [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1285-5p aggcGTGAGATgggg GAUCUCAC m7b Created HHHNE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-1285-5p aggcGTGAGATgggg GAUCUCAC m7b Created HHHSE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-1285-5p aggcGTGAGATgggg GAUCUCAC m7b Created HHHNE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-1285-5p aggcGTGAGATgggg GAUCUCAC m7b Created HHHSE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33360726G>T COSM1531680 TCGA-95-7043-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6078 acaTCAGGCGtggga CCGCCUGA m7b Disrupted HHHNE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-6078 acaTCAGGCGtggga CCGCCUGA m7b Disrupted HHHSE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33360723C>A COSM574828 TCGA-05-4390-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6078 tgtacaTCAGGCGtg CCGCCUGA m7b Disrupted HHHNE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-6078 tgtacaTCAGGCGtg CCGCCUGA m7b Disrupted HHHSE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-6078 tgtacaTCAGGCGtg CCGCCUGA m7b Disrupted HHHNE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992
hsa-miR-6078 tgtacaTCAGGCGtg CCGCCUGA m7b Disrupted HHHSE_10252_LTBP1|NM_001166264|exon_CDS|-6.43981673002836|-1.05748812174992

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33360658T>G COSM1690460 YUMOOK [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4461 aTCTCAATgacgcca GAUUGAGA m7b Disrupted HHFCT_87801_cluster-12829_18_110
hsa-miR-616-3p atctCAATGACgcca AGUCAUUG m7b Disrupted HHFCT_87801_cluster-12829_18_110
hsa-miR-4461 aTCTCAATgacgcca GAUUGAGA m7b Disrupted HHFKP_81081_cluster-12829_25_8
hsa-miR-616-3p atctCAATGACgcca AGUCAUUG m7b Disrupted HHFKP_81081_cluster-12829_25_8
hsa-miR-4461 aTCTCAATgacgcca GAUUGAGA m7b Disrupted HHFCT_87801_cluster-12829_18_110
hsa-miR-616-3p atctCAATGACgcca AGUCAUUG m7b Disrupted HHFCT_87801_cluster-12829_18_110
hsa-miR-4461 aTCTCAATgacgcca GAUUGAGA m7b Disrupted HHFKP_81081_cluster-12829_25_8
hsa-miR-616-3p atctCAATGACgcca AGUCAUUG m7b Disrupted HHFKP_81081_cluster-12829_25_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser