SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0053927
Gene Symbol: LTBP1
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.33275062G>A COSM3581277 TCGA-DA-A1I5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-193a-3p gatttatGGCCAGTg AACUGGCC m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-193b-3p gatttatGGCCAGTg AACUGGCC m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-3187-3p gatttATGGCCAgtg UUGGCCAU m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-3190-5p gatttaTGGCCAGtg UCUGGCCA m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4529-5p gatttATGGCCagtg AGGCCAUC m6b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4794 gatttaTAGCCAGtg UCUGGCUA m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-664a-5p gatttaTAGCCAGTg ACUGGCUA m8a Created HHFCT_87794_cluster-12829_11_14
hsa-miR-892b gatttatAGCCAGTg CACUGGCU m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-193a-3p gatttatGGCCAGTg AACUGGCC m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-193b-3p gatttatGGCCAGTg AACUGGCC m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-3187-3p gatttATGGCCAgtg UUGGCCAU m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-3190-5p gatttaTGGCCAGtg UCUGGCCA m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4529-5p gatttATGGCCagtg AGGCCAUC m6b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4794 gatttaTAGCCAGtg UCUGGCUA m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-664a-5p gatttaTAGCCAGTg ACUGGCUA m8a Created HHFCT_87794_cluster-12829_11_14
hsa-miR-892b gatttatAGCCAGTg CACUGGCU m7b Created HHFCT_87794_cluster-12829_11_14

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33275047C>T COSM118231 TCGA-61-2109-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1285-3p gcattTGCCCAGcag UCUGGGCA m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-3135b gcatttgTCCAGCag GGCUGGAG m6b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-3187-5p gcattTGCCCAGcag CCUGGGCA m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4486 gcatttGCCCAGCag GCUGGGCG m7a Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-4638-3p gcattTGTCCAGcag CCUGGACA m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-5189-5p gcattTGCCCAGcag UCUGGGCA m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-5589-5p gcatttgCCCAGCag GGCUGGGU m6b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-612 gcattTGCCCAGCag GCUGGGCA m8a Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-6860 gcattTGCCCAGcag ACUGGGCA m7b Disrupted HHFCT_87794_cluster-12829_11_14

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33275042A>C COSM1020512 TCGA-DI-A0WH-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-105-5p cttgtGCATTTGccc UCAAAUGC m7b Disrupted HHFCT_87794_cluster-12829_11_14
hsa-miR-124-3p cttGTGCCTTtgccc UAAGGCAC m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-506-3p cttGTGCCTTtgccc UAAGGCAC m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-548an cttgTGCCTTTgccc AAAAGGCA m7b Created HHFCT_87794_cluster-12829_11_14
hsa-miR-5582-5p ctTGTGCCTttgccc UAGGCACA m7b (m6b->m7b) HHFCT_87794_cluster-12829_11_14
hsa-miR-7853-5p cttgtGCATTTGccc UCAAAUGC m7b Disrupted HHFCT_87794_cluster-12829_11_14

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33275039T>C COSM4775883 SJHYPO052 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][acute_lymphoblastic_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7i-3p tttcTTGCGCAtttg CUGCGCAA m7b Created HHFCT_87794_cluster-12829_11_14
hsa-let-7i-3p tttcTTGCGCAtttg CUGCGCAA m7b Created HHFCT_87794_cluster-12829_11_14

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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