SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0053921
Gene Symbol: LTBP1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33389290C>T COSM419184 TCGA-C4-A0EZ-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-541-5p ccgATCCTTacttca AAAGGAUU m6b Created HHFCT_87806_cluster-12829_23_8
hsa-miR-548ao-5p ccgatccTTACTTCa AGAAGUAA m7b Created HHFCT_87806_cluster-12829_23_8
hsa-miR-548ax ccgatccTTACTTCa AGAAGUAA m7b Created HHFCT_87806_cluster-12829_23_8
hsa-miR-638 cCGATCCCTacttca AGGGAUCG m8a (m8a->m7a) HHFCT_87806_cluster-12829_23_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33389289C>T COSM4496721 CSCC-7-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-638 gcCGATCCCTacttc AGGGAUCG m8a Disrupted HHFCT_87806_cluster-12829_23_8
hsa-miR-6832-5p gccgaTCTCTACTtc AGUAGAGA m8a Created HHFCT_87806_cluster-12829_23_8
hsa-miR-638 gcCGATCCCTacttc AGGGAUCG m8a Disrupted HHFCT_87806_cluster-12829_23_8
hsa-miR-6832-5p gccgaTCTCTACTtc AGUAGAGA m8a Created HHFCT_87806_cluster-12829_23_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33389288C>T COSM3581310 TCGA-EE-A2MR-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-638 agcCGATCCCTactt AGGGAUCG m8a Disrupted HHFCT_87806_cluster-12829_23_8
hsa-miR-8065 agccgaTTCCTACtt UGUAGGAA m7b Created HHFCT_87806_cluster-12829_23_8
hsa-miR-638 agcCGATCCCTactt AGGGAUCG m8a Disrupted HHFCT_87806_cluster-12829_23_8
hsa-miR-8065 agccgaTTCCTACtt UGUAGGAA m7b Created HHFCT_87806_cluster-12829_23_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33273682G>A COSM1690456 YUKLAB [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-144-5p gaacccTGATATCtg GGAUAUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-3074-3p gaaccCTGATATCtg GAUAUCAG m8a Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-3127-5p gaaCCCTGATatctg AUCAGGGC m7a Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-6823-5p gAACCCTGAtatctg UCAGGGUU m8a (m8a->m7a) HHFCT_87793_cluster-12829_10_8
hsa-miR-144-5p gaacccTGATATCtg GGAUAUCA m7b Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-3074-3p gaaccCTGATATCtg GAUAUCAG m8a Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-3127-5p gaaCCCTGATatctg AUCAGGGC m7a Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-6823-5p gAACCCTGAtatctg UCAGGGUU m8a (m8a->m7a) HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-144-5p gaacccTGATATCtg GGAUAUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-3074-3p gaaccCTGATATCtg GAUAUCAG m8a Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-3127-5p gaaCCCTGATatctg AUCAGGGC m7a Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-6823-5p gAACCCTGAtatctg UCAGGGUU m8a (m8a->m7a) HHFCT_87793_cluster-12829_10_8
hsa-miR-144-5p gaacccTGATATCtg GGAUAUCA m7b Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-3074-3p gaaccCTGATATCtg GAUAUCAG m8a Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-3127-5p gaaCCCTGATatctg AUCAGGGC m7a Disrupted HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688
hsa-miR-6823-5p gAACCCTGAtatctg UCAGGGUU m8a (m8a->m7a) HHKTA_43670_NM_206943|2664|2703|1.73071764207028|0.444076136370688

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33273665A>C COSM124233 HN_63095 [upper_aerodigestive_tract][pharynx][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-5p atcaaTGAATGTact AACAUUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-181b-5p atcaaTGAATGTact AACAUUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-181c-5p atcaaTGAATGTact AACAUUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-181d-5p atcaaTGAATGTact AACAUUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-33a-5p atCAATGCAtgtact GUGCAUUG m7b (m6b->m7b) HHFCT_87793_cluster-12829_10_8
hsa-miR-33b-5p atCAATGCAtgtact GUGCAUUG m7b (m6b->m7b) HHFCT_87793_cluster-12829_10_8
hsa-miR-4262 atcaaTGAATGTact GACAUUCA m7b Disrupted HHFCT_87793_cluster-12829_10_8
hsa-miR-586 atcAATGCATgtact UAUGCAUU m7b Created HHFCT_87793_cluster-12829_10_8
hsa-miR-664a-3p atcAATGAATgtact UAUUCAUU m7b Disrupted HHFCT_87793_cluster-12829_10_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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