SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0053897
Gene Symbol: LTBP1
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33181345T>A COSN6178875 RK200_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p cacagAATGTGAAta UUCACAUU m8a Disrupted HHRBL_7956_BCBL1-2of3-SCL_15295
hsa-miR-23c cacagAATGTGAata AUCACAUU m7b Disrupted HHRBC_7051_BC3-2of3-SCL_10817
hsa-miR-23b-3p cacagAATGTGAata AUCACAUU m7b Disrupted HHRBC_7051_BC3-2of3-SCL_10817
hsa-miR-23a-3p cacagAATGTGAata AUCACAUU m7b Disrupted HHRBC_7051_BC3-2of3-SCL_10817
hsa-miR-23c cacagAATGTGAata AUCACAUU m7b Disrupted HHRBL_7956_BCBL1-2of3-SCL_15295
hsa-miR-23b-3p cacagAATGTGAata AUCACAUU m7b Disrupted HHRBL_7956_BCBL1-2of3-SCL_15295
hsa-miR-23a-3p cacagAATGTGAata AUCACAUU m7b Disrupted HHRBL_7956_BCBL1-2of3-SCL_15295
hsa-miR-130a-5p cacagAATGTGAAta UUCACAUU m8a Disrupted HHRBC_7051_BC3-2of3-SCL_10817

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33143563A>G COSN5502213 RK088_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6832-3p aAAAAGGGcaccctg ACCCUUUU m7b Created HHFKP_81069_cluster-12829_13_13

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser