SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
	Home	Search	Help	Download

Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

Transcript ID:	hsa_circ_0053890
Gene Symbol:	LTBP1
Browse Associations
Browse Pathways

Somatic mutations that impact miRNA target sites

Mutation		Mutation ID	Sample Name	Cancer Type
chr2:g.33110603G>T		COSM97987	347	[kidney][NS][carcinoma][chromophobe_renal_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-330-5p	cttCCCAGAGtgtgg	UCUCUGGG	m7b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-4314	ctTCCCAGAGtgtgg	CUCUGGGA	m8a	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-4646-5p	cTTCCCAGagtgtgg	ACUGGGAA	m7b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-326	cttCCCAGAGtgtgg	CCUCUGGG	m7b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-204-3p	cTTCCCAGagtgtgg	GCUGGGAA	m7b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-6871-5p	ctTCCCATagtgtgg	CAUGGGAG	m6b	Created	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-6506-5p	ctTCCCAGagtgtgg	ACUGGGAU	m6b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-619-5p	ctTCCCAGagtgtgg	GCUGGGAU	m6b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-514a-5p	cttcCCAGAGTgtgg	UACUCUGG	m7b	Disrupted	HHHSE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-4646-5p	cTTCCCAGagtgtgg	ACUGGGAA	m7b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-4314	ctTCCCAGAGtgtgg	CUCUGGGA	m8a	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-330-5p	cttCCCAGAGtgtgg	UCUCUGGG	m7b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-326	cttCCCAGAGtgtgg	CCUCUGGG	m7b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-6871-5p	ctTCCCATagtgtgg	CAUGGGAG	m6b	Created	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-6506-5p	ctTCCCAGagtgtgg	ACUGGGAU	m6b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-619-5p	ctTCCCAGagtgtgg	GCUGGGAU	m6b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794
hsa-miR-514a-5p	cttcCCAGAGTgtgg	UACUCUGG	m7b	Disrupted	HHHNE_10251_LTBP1|NM_206943|exon_CDS|-6.36907583572214|1.35418738407794

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser