SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0053889
Gene Symbol: LTBP1
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33021012C>T COSM4624789 DLD1 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p tagctGCTCAGGaca CCUGAGCC m7a Created HHFKP_81062_cluster-12829_6_8
hsa-miR-1200 tagctgCTCAGGAca CUCCUGAG m7b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-1285-3p tagcTGCCCAGgaca UCUGGGCA m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-1343-3p tagctgCCCAGGAca CUCCUGGG m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-3187-5p tagcTGCCCAGGaca CCUGGGCA m8a Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-4324 tagctgCTCAGGaca CCCUGAGA m6b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-4468 tagCTGCTCaggaca AGAGCAGA m6b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-5189-5p tagcTGCCCAGgaca UCUGGGCA m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-544b tagctgCTCAGGaca ACCUGAGG m6b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-612 tagcTGCCCAGgaca GCUGGGCA m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-646 tAGCTGCTcaggaca AAGCAGCU m7b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-6742-3p tagctgCCCAGGaca ACCUGGGU m6b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-6783-3p tagctgCCCAGGAca UUCCUGGG m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-6852-5p tagctgCCCAGGaca CCCUGGGG m6b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-6860 tagcTGCCCAGgaca ACUGGGCA m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-939-3p tagctGCCCAGGaca CCCUGGGC m7b Disrupted HHFKP_81062_cluster-12829_6_8
Mutation Mutation ID Sample Name Cancer Type
chr2:g.33021008C>T COSM1020486 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33021007G>T COSM185839 TCGA-AA-A00D-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33021002C>A COSM1531697 TCGA-75-6214-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-335-3p tgTGAAAAAatagct UUUUUCAU m7a (m6a->m7a) HHFKP_81062_cluster-12829_6_8
hsa-miR-5096 tGTGAAACaatagct GUUUCACC m7a Disrupted HHFKP_81062_cluster-12829_6_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33020980A>G COSM1159177 8014741 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-133a-3p accagGGACCAAggg UUUGGUCC m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-133b accagGGACCAAggg UUUGGUCC m7b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-210-5p acCAGGGGCcaaggg AGCCCCUG m7b (m6b->m7b) HHFKP_81062_cluster-12829_6_8
hsa-miR-212-5p accagggGCCAAGGg ACCUUGGC m7b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-328-3p accagGGGCCAaggg CUGGCCCU m6b Created HHFKP_81062_cluster-12829_6_8
hsa-miR-331-3p aCCAGGGGCcaaggg GCCCCUGG m8a (m7a->m8a) HHFKP_81062_cluster-12829_6_8
hsa-miR-4281 accaGGGACCaaggg GGGUCCCG m6b Disrupted HHFKP_81062_cluster-12829_6_8
hsa-miR-874-5p accaGGGGCCaaggg CGGCCCCA m6b Created HHFKP_81062_cluster-12829_6_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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