SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000627
Gene Symbol: LTBP1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.33399051C>T COSN1836401 RK012_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4645-5p ttcccgGCCTGGagc ACCAGGCA m6b Disrupted HHFCT_87811_cluster-12829_29_517

Mutation Mutation ID Sample Name Cancer Type
chr2:g.33398772A>T COSN1237900 HCC56T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3646 tgTTCATTTgtaaaa AAAAUGAA m7b (m6b->m7b) HHFCT_87808_cluster-12829_25_10
hsa-miR-520d-5p tgttcaTTTGTAaaa CUACAAAG m6b Created HHFCT_87808_cluster-12829_25_10
hsa-miR-524-5p tgttcaTTTGTAaaa CUACAAAG m6b Created HHFCT_87808_cluster-12829_25_10
hsa-miR-5580-3p tgttCATATGTaaaa CACAUAUG m7b Disrupted HHFCT_87808_cluster-12829_25_10
hsa-miR-3646 tgTTCATTTgtaaaa AAAAUGAA m7b (m6b->m7b) HHFKP_81087_cluster-12829_31_372
hsa-miR-520d-5p tgttcaTTTGTAaaa CUACAAAG m6b Created HHFKP_81087_cluster-12829_31_372
hsa-miR-524-5p tgttcaTTTGTAaaa CUACAAAG m6b Created HHFKP_81087_cluster-12829_31_372
hsa-miR-5580-3p tgttCATATGTaaaa CACAUAUG m7b Disrupted HHFKP_81087_cluster-12829_31_372

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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