SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001159740
Gene Symbol: LTA
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573507C>T COSM3624576 TCGA-EB-A5UL-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3202 acCCCTTCCAtgtgc UGGAAGGG m8a Disrupted HPSEF_19274_G23256.1_31541291
hsa-miR-4717-3p accccttCCATGTGc ACACAUGG m7b Disrupted HPSEF_19274_G23256.1_31541291
hsa-miR-4802-3p acccctTCCATGTgc UACAUGGA m7b Disrupted HPSEF_19274_G23256.1_31541291
hsa-miR-488-3p accCCTTTCAtgtgc UUGAAAGG m7b Created HPSEF_19274_G23256.1_31541291
hsa-miR-5681a acCCCTTTCatgtgc AGAAAGGG m7b (m6b->m7b) HPSEF_19274_G23256.1_31541291
hsa-miR-6730-5p accCCTTTCatgtgc AGAAAGGU m6b Created HPSEF_19274_G23256.1_31541291

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573502C>G COSM483857 TCGA-CJ-6032-01 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3179 ccagtaCCCCTTCca AGAAGGGG m7b Disrupted HPSEF_19274_G23256.1_31541291
hsa-miR-3202 ccagtacCCCTTCCa UGGAAGGG m7b Disrupted HPSEF_19274_G23256.1_31541291
hsa-miR-3936 ccagtACCCCTTcca UAAGGGGU m7b Disrupted HPSEF_19274_G23256.1_31541291

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573402C>G COSM1161621 tumor_4163639 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-411-5p acttcGTCTACTccc UAGUAGAC m7b Disrupted HPSEF_19273_G23255.1_31541179

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573399C>T COSM3430473 TCGA-EI-6917-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3973 tcTACTTTGTctact ACAAAGUA m8a Created HPSEF_19273_G23255.1_31541179

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573390C>T COSM3253291 T3724 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1255b-2-3p ccAGTGGTatctact AACCACUU m6b Created HPSEF_19273_G23255.1_31541179
hsa-miR-1273g-3p cCAGTGGTatctact ACCACUGC m7a Created HPSEF_19273_G23255.1_31541179
hsa-miR-181a-2-3p cCAGTGGTatctact ACCACUGA m7a Created HPSEF_19273_G23255.1_31541179
hsa-miR-3935 ccagtggTATCTACt UGUAGAUA m7b Created HPSEF_19273_G23255.1_31541179
hsa-miR-4252 cCAGTGGCatctact GGCCACUG m7b Disrupted HPSEF_19273_G23255.1_31541179
hsa-miR-1255b-2-3p ccAGTGGTatctact AACCACUU m6b Created HPSLB_6286_G7669.1_31541167
hsa-miR-1273g-3p cCAGTGGTatctact ACCACUGC m7a Created HPSLB_6286_G7669.1_31541167
hsa-miR-181a-2-3p cCAGTGGTatctact ACCACUGA m7a Created HPSLB_6286_G7669.1_31541167
hsa-miR-3935 ccagtggTATCTACt UGUAGAUA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-4252 cCAGTGGCatctact GGCCACUG m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573375G>C COSM1329818 TCGA-36-2543-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-151a-5p ctCTCCTCGtcccca UCGAGGAG m7b (m6b->m7b) HPSLB_6286_G7669.1_31541167
hsa-miR-151b ctCTCCTCGtcccca UCGAGGAG m7b (m6b->m7b) HPSLB_6286_G7669.1_31541167
hsa-miR-3144-5p ctctcctGGTCCCCa AGGGGACC m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-3150b-3p cTCTCCTCgtcccca UGAGGAGA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-3191-3p ctctcctCGTCCCCa UGGGGACG m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-4768-3p cTCTCCTGGtcccca CCAGGAGA m8a (m8a->m7a) HPSLB_6286_G7669.1_31541167
hsa-miR-4784 cTCTCCTCgtcccca UGAGGAGA m7b Created HPSLB_6286_G7669.1_31541167
hsa-miR-665 ctCTCCTGGTcccca ACCAGGAG m8a Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573370C>A COSM1077584 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-3123 caATTCTCTcctggt CAGAGAAU m7b (m7b->m6b) HPSLB_6286_G7669.1_31541167
hsa-miR-4306 caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4644 caatTCTCTCCtggt UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4768-3p caattcTCTCCTGGt CCAGGAGA m8a Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-665 caattctCTCCTGGt ACCAGGAG m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573368C>T COSM4485488 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-219a-2-3p aACAATTCTctcctg AGAAUUGU m8a (m8a->m7a) HPSLB_6286_G7669.1_31541167
hsa-miR-3123 aacaATTCTCTcctg CAGAGAAU m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4306 aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-4644 aacaatTCTCTCCtg UGGAGAGA m7b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573360C>A COSM1329819 TCGA-36-2537-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-513c-5p cCTTGAGAAacaatt UUCUCAAG m8a (m7a->m8a) HPSLB_6286_G7669.1_31541167
hsa-miR-514b-5p cCTTGAGAAacaatt UUCUCAAG m8a (m7a->m8a) HPSLB_6286_G7669.1_31541167
hsa-miR-7158-5p ccTTGAGCaacaatt GGCUCAAU m6b Disrupted HPSLB_6286_G7669.1_31541167
hsa-miR-744-3p ccttgaGCAACAatt CUGUUGCC m6b Disrupted HPSLB_6286_G7669.1_31541167

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31573007C>A COSM3761887 TCGA-AM-5820-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1226-5p cacagcaCCCTCAaa GUGAGGGC m6b Disrupted HPSEF_19272_G23254.1_31540793
hsa-miR-377-5p cacagCAACCTCaaa AGAGGUUG m7b Created HPSEF_19272_G23254.1_31540793
hsa-miR-6086 cacagCAACCTCaaa GGAGGUUG m7b Created HPSEF_19272_G23254.1_31540793
hsa-miR-655-5p cacagcAACCTCaaa AGAGGUUA m6b Created HPSEF_19272_G23254.1_31540793
hsa-miR-6734-5p cacagcaCCCTCAAa UUGAGGGG m7a Disrupted HPSEF_19272_G23254.1_31540793
hsa-miR-6804-5p cacagCACCCTCAaa UGAGGGUG m8a Disrupted HPSEF_19272_G23254.1_31540793
hsa-miR-6834-5p cacagcaCCCTCAaa GUGAGGGA m6b Disrupted HPSEF_19272_G23254.1_31540793

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31572806C>T COSM3921358 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3173-3p CCTCCTTTtggggct AAAGGAGG m8a Created HPSEF_19271_G23253.1_31540583
hsa-miR-5699-5p cctccttTTGGGGCt UGCCCCAA m7b Created HPSEF_19271_G23253.1_31540583

Mutation Mutation ID Sample Name Cancer Type
chr6:g.31572803C>T COSM3921357 TCGA-QB-A6FS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3173-3p cctCCTCCTTctggg AAAGGAGG m7b Disrupted HPSEF_19271_G23253.1_31540583
hsa-miR-583 cctCCTCTTTctggg CAAAGAGG m7b Created HPSEF_19271_G23253.1_31540583
hsa-miR-6891-5p cctCCTCCTTctggg UAAGGAGG m7b Disrupted HPSEF_19271_G23253.1_31540583

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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