SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_020873
Gene Symbol: LRRN1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.3846349T>C COSM4117413 TCGA-HU-A4GX-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-511-3p cataACACATactgc AAUGUGUA m6b Created HPHES_5242_G6959.1_3888023
Mutation Mutation ID Sample Name Cancer Type
chr3:g.3846346A>C COSM1422852 TCGA-CM-5861-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr3:g.3846341A>G COSM4699278 T3498 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1226-5p aaCCCTCACataaca GUGAGGGC m7a (m7a->m6a) HPHES_5242_G6959.1_3888023
hsa-miR-381-5p aacCCTCGCataaca AGCGAGGU m6b Created HPHES_5242_G6959.1_3888023
hsa-miR-4316 aacCCTCACataaca GGUGAGGC m6b Disrupted HPHES_5242_G6959.1_3888023
hsa-miR-4501 aacccTCACATAaca UAUGUGAC m7a Disrupted HPHES_5242_G6959.1_3888023
hsa-miR-4737 aacCCTCGCATaaca AUGCGAGG m8a Created HPHES_5242_G6959.1_3888023
hsa-miR-6834-5p aaCCCTCACataaca GUGAGGGA m7a (m7a->m6a) HPHES_5242_G6959.1_3888023

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3846337C>G COSM4422962 2171659 [central_nervous_system][medulla][glioma][astrocytoma_Grade_III]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1226-5p tgataaCCCTCACat GUGAGGGC m7a Disrupted HPHES_5242_G6959.1_3888023
hsa-miR-296-3p tgatAACCCTCacat GAGGGUUG m7a Disrupted HPHES_5242_G6959.1_3888023
hsa-miR-4316 tgataacCCTCACat GGUGAGGC m6b Disrupted HPHES_5242_G6959.1_3888023
hsa-miR-6834-5p tgataaCCCTCACat GUGAGGGA m7a Disrupted HPHES_5242_G6959.1_3888023

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3844951C>A COSM1537896 TCGA-69-7980-01 [lung][right_upper_lobe][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1270 ttTCTCCAaaaacaa CUGGAGAU m6b Created HPHES_5240_G6957.1_3886643
hsa-miR-1273h-5p tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-19a-5p tttctccCAAAACaa AGUUUUGC m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-19b-1-5p tttctccCAAAACaa AGUUUUGC m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-19b-2-5p tttctccCAAAACaa AGUUUUGC m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-2052 tttctccCAAAACAa UGUUUUGA m7a Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-30b-3p tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-30c-1-3p ttTCTCCCAaaacaa CUGGGAGA m7b (m7b->m6b) HPHES_5240_G6957.1_3886643
hsa-miR-30c-2-3p ttTCTCCCAaaacaa CUGGGAGA m7b (m7b->m6b) HPHES_5240_G6957.1_3886643
hsa-miR-3122 tttcTCCCAAaacaa GUUGGGAC m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-3689a-3p tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-3689b-3p tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-3689c tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-3913-5p tttcTCCCAAAacaa UUUGGGAC m7a Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-450a-1-3p tttcTCCCAAaacaa AUUGGGAA m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-4516 tTTCTCCCaaaacaa GGGAGAAG m7a Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-620 ttTCTCCAaaaacaa AUGGAGAU m6b Created HPHES_5240_G6957.1_3886643
hsa-miR-6513-5p tttcTCCCAAAacaa UUUGGGAU m7a Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-6731-5p ttTCTCCCAaaacaa UGGGAGAG m7a (m7a->m6a) HPHES_5240_G6957.1_3886643
hsa-miR-6779-5p tttCTCCCAaaacaa CUGGGAGG m6b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-6780a-5p tttCTCCCAAaacaa UUGGGAGG m7a Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-6788-5p ttTCTCCCAaaacaa CUGGGAGA m7b (m7b->m6b) HPHES_5240_G6957.1_3886643
hsa-miR-6878-5p tTTCTCCCaaaacaa AGGGAGAA m7b Disrupted HPHES_5240_G6957.1_3886643
hsa-miR-7850-5p tttcTCCAAAaacaa GUUUGGAC m6b Created HPHES_5240_G6957.1_3886643
hsa-miR-8085 ttTCTCCCAaaacaa UGGGAGAG m7a (m7a->m6a) HPHES_5240_G6957.1_3886643
hsa-miR-887-5p tttCTCCCAAaacaa CUUGGGAG m7b Disrupted HPHES_5240_G6957.1_3886643

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3844763G>A COSM321494 631084 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-211-3p gaaattcGTCCCTGg GCAGGGAC m7b Disrupted HPHES_5239_G6956.1_3886437
hsa-miR-5187-5p gaaatTCATCCCtgg UGGGAUGA m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-6757-5p gaaattCATCCCTgg UAGGGAUG m7b Created HPHES_5239_G6956.1_3886437

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3844762C>T COSM1422813 TCGA-CA-6718-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3606-3p tGAAATTTgtccctg AAAAUUUC m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-513a-3p tGAAATTTgtccctg UAAAUUUC m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-513c-3p tGAAATTTgtccctg UAAAUUUC m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-7845-5p tgaaattTGTCCCTg AAGGGACA m7b Created HPHES_5239_G6956.1_3886437

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3844756G>A COSM3593638 TCGA-FS-A4F5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-130a-5p cgtATGTGAAattcg UUCACAUU m7a Disrupted HPHES_5239_G6956.1_3886437
hsa-miR-23a-3p cgtATGTGAaattcg AUCACAUU m6b Disrupted HPHES_5239_G6956.1_3886437
hsa-miR-23b-3p cgtATGTGAaattcg AUCACAUU m6b Disrupted HPHES_5239_G6956.1_3886437
hsa-miR-23c cgtATGTGAaattcg AUCACAUU m6b Disrupted HPHES_5239_G6956.1_3886437
hsa-miR-590-3p cgtatgTAAAATTcg UAAUUUUA m7b Created HPHES_5239_G6956.1_3886437

Mutation Mutation ID Sample Name Cancer Type
chr3:g.3844750G>A COSM2987092 537 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-518a-5p aCTTTGCAtatgtga CUGCAAAG m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-527 aCTTTGCAtatgtga CUGCAAAG m7b Created HPHES_5239_G6956.1_3886437
hsa-miR-5580-3p actttgCATATGTGa CACAUAUG m8a Created HPHES_5239_G6956.1_3886437

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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