SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0056643
Gene Symbol: LRP1B
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.140928128G>A COSN5782335 HX22T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2681-3p ttCCATGATgtaatg UAUCAUGG m7b (m6b->m7b) HPRO6_46988_G55699.1_141685696
hsa-miR-499a-3p ttccaTGATGTaatg AACAUCAC m6b Created HPRO6_46988_G55699.1_141685696
hsa-miR-499b-3p ttccaTGATGTaatg AACAUCAC m6b Created HPRO6_46988_G55699.1_141685696
hsa-miR-7153-3p ttCCATGGTGtaatg CACCAUGG m8a Disrupted HPRO6_46988_G55699.1_141685696
hsa-miR-2681-3p ttCCATGATgtaatg UAUCAUGG m7b (m6b->m7b) HPRO8_8878_G11732.1_141685696
hsa-miR-499a-3p ttccaTGATGTaatg AACAUCAC m6b Created HPRO8_8878_G11732.1_141685696
hsa-miR-499b-3p ttccaTGATGTaatg AACAUCAC m6b Created HPRO8_8878_G11732.1_141685696
hsa-miR-7153-3p ttCCATGGTGtaatg CACCAUGG m8a Disrupted HPRO8_8878_G11732.1_141685696
hsa-miR-2681-3p ttCCATGATgtaatg UAUCAUGG m7b (m6b->m7b) HPTA3_11429_G18047.1_141685696
hsa-miR-499a-3p ttccaTGATGTaatg AACAUCAC m6b Created HPTA3_11429_G18047.1_141685696
hsa-miR-499b-3p ttccaTGATGTaatg AACAUCAC m6b Created HPTA3_11429_G18047.1_141685696
hsa-miR-7153-3p ttCCATGGTGtaatg CACCAUGG m8a Disrupted HPTA3_11429_G18047.1_141685696

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903040G>A COSM3567231 TCGA-GN-A262-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4760-3p aattgTGAATTattg AAAUUCAU m6b Created HHFKP_77840_cluster-13926_8_7
hsa-miR-5092 aattGTGGATTattg AAUCCACG m7a Disrupted HHFKP_77840_cluster-13926_8_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903033G>T COSM1399756 TCGA-F4-6460-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-187-5p gattaTTGTAGCaat GGCUACAA m7b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-221-3p gattatTGTAGCaat AGCUACAU m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-222-3p gattatTGTAGCaat AGCUACAU m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-338-5p gatTATTGTagcaat AACAAUAU m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-5089-3p gattattGTAGCAat AUGCUACU m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-548v gattatTGTAGCaat AGCUACAG m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-5692a gATTATTTtagcaat CAAAUAAU m7b Created HHFKP_77840_cluster-13926_8_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903019A>C COSM1399755 TCGA-AA-3492-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1183 tcatCTACAGTGcag CACUGUAG m8a Created HHFKP_77840_cluster-13926_8_7
hsa-miR-376a-2-5p tcATCTACagtgcag GGUAGAUU m6b Created HHFKP_77840_cluster-13926_8_7
hsa-miR-4325 tcatctaAAGTGCAg UUGCACUU m7b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-8061 tcATCTAAagtgcag CUUAGAUU m6b Disrupted HHFKP_77840_cluster-13926_8_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903014C>T COSM4085206 TCGA-HU-A4GT-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-187-5p taaagTGTAGCCaag GGCUACAA m7a Created HHFKP_77840_cluster-13926_8_7
hsa-miR-4325 taAAGTGCAgccaag UUGCACUU m7b (m7b->m6b) HHFKP_77840_cluster-13926_8_7
hsa-miR-4793-3p taaAGTGCAGccaag UCUGCACU m7b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-604 taaagtGCAGCCaag AGGCUGCG m6b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-647 taaagtGCAGCCAag GUGGCUGC m7b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-6762-3p taaagtGCAGCCAag UGGCUGCU m7a Disrupted HHFKP_77840_cluster-13926_8_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903007G>T COSM1007057 TCGA-BS-A0TC-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1-5p cagccAAGTATGTga ACAUACUU m8a Disrupted HHFKP_77840_cluster-13926_8_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140903001G>T COSM1685098 PC-9BRc1 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1178-3p agtatGTGAGCAgca UUGCUCAC m7b Disrupted HHFKP_77840_cluster-13926_8_7
hsa-miR-767-3p agtatgTGAGCAGca UCUGCUCA m7b Disrupted HHFKP_77840_cluster-13926_8_7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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