SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0056630
Gene Symbol: LRP1B
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr2:g.140502971A>C COSM3117309 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6500-3p aagtgtACAAGTGca ACACUUGU m7b Created HHFKP_77837_cluster-13926_5_7
hsa-let-7a-2-3p aagTGTACAagtgca CUGUACAG m6b Created HHFCT_83826_cluster-13926_2_6
hsa-let-7c-3p aagTGTACAagtgca CUGUACAA m6b Created HHFCT_83826_cluster-13926_2_6
hsa-let-7g-3p aagTGTACAagtgca CUGUACAG m6b Created HHFCT_83826_cluster-13926_2_6
hsa-miR-6500-3p aagtgtACAAGTGca ACACUUGU m7b Created HHFCT_83826_cluster-13926_2_6
hsa-let-7c-3p aagTGTACAagtgca CUGUACAA m6b Created HHFKP_77837_cluster-13926_5_7
hsa-let-7a-2-3p aagTGTACAagtgca CUGUACAG m6b Created HHFKP_77837_cluster-13926_5_7
hsa-let-7g-3p aagTGTACAagtgca CUGUACAG m6b Created HHFKP_77837_cluster-13926_5_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140502968G>A COSM3894873 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-20a-3p tgtaaaAATGCAGgt ACUGCAUU m7b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-4325 tgtaaAAGTGCAggt UUGCACUU m7b Disrupted HHFKP_77837_cluster-13926_5_7
hsa-miR-4793-3p tgtaaaAGTGCAGgt UCUGCACU m7b Disrupted HHFKP_77837_cluster-13926_5_7
hsa-miR-153-5p tgtAAAAATGcaggt UCAUUUUU m7b Created HHFKP_77837_cluster-13926_5_7

Mutation Mutation ID Sample Name Cancer Type
chr2:g.140502961T>C COSM1007016 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3686 gtgcaggTACAGAaa AUCUGUAA m6b Disrupted HHFKP_77837_cluster-13926_5_7
hsa-miR-1271-3p gtgCAGGCACagaaa AGUGCCUG m7b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-7157-3p gtgcagGCACAGAaa UCUGUGCU m7a Created HHFKP_77837_cluster-13926_5_7
hsa-miR-6894-3p gtGCAGGCAcagaaa UUGCCUGC m7b (m6b->m7b) HHFKP_77837_cluster-13926_5_7
hsa-miR-6889-3p gtgcaGGCACAGAaa UCUGUGCC m8a Created HHFKP_77837_cluster-13926_5_7
hsa-miR-6737-3p gtgcagGCACAGAaa UCUGUGCU m7a Created HHFKP_77837_cluster-13926_5_7
hsa-miR-550b-2-5p gtgcAGGCACAgaaa AUGUGCCU m7b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-550a-5p gtgCAGGCACagaaa AGUGCCUG m7b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-550a-3-5p gtgCAGGCACagaaa AGUGCCUG m7b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-5008-3p gtgcagGCACAGaaa CCUGUGCU m6b Created HHFKP_77837_cluster-13926_5_7
hsa-miR-4763-5p gtGCAGGCacagaaa CGCCUGCC m6b Created HHFKP_77837_cluster-13926_5_7

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser