SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0029823
Gene Symbol: LNX2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553371C>A COSM946428 TCGA-D1-A103-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4291 tgcaaTGCTGAAagc UUCAGCAG m7a Disrupted HHFCT_40177_cluster-6099_11_8
hsa-miR-4310 tgcAATGCTGaaagc GCAGCAUU m7b Disrupted HHFCT_40177_cluster-6099_11_8
hsa-miR-7157-5p tgcAATGCTGAaagc UCAGCAUU m8a Disrupted HHFCT_40177_cluster-6099_11_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553369G>A COSM3793227 TCGA-FD-A3SO-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3119 caatgctAAAAGCCa UGGCUUUU m7b Created HHFCT_40177_cluster-6099_11_8
hsa-miR-3160-5p caatgctGAAAGCCa GGCUUUCU m7a Disrupted HHFCT_40177_cluster-6099_11_8
hsa-miR-374b-3p caaTGCTAAaagcca CUUAGCAG m6b Created HHFCT_40177_cluster-6099_11_8
hsa-miR-4291 caaTGCTGAAagcca UUCAGCAG m7a Disrupted HHFCT_40177_cluster-6099_11_8
hsa-miR-4310 cAATGCTGaaagcca GCAGCAUU m7b Disrupted HHFCT_40177_cluster-6099_11_8
hsa-miR-7157-5p cAATGCTGAaagcca UCAGCAUU m8a (m8a->m7a) HHFCT_40177_cluster-6099_11_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553250C>T COSM4641806 LIM2405 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3913-3p taTGATGTCagttgg AGACAUCA m7b (m6b->m7b) HHFKP_38800_cluster-6099_7_8
hsa-miR-4642 tatGATGCCAgttgg AUGGCAUC m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-4720-5p tatgATGCCAGttgg CCUGGCAU m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-4799-3p tatgATGCCAGTtgg ACUGGCAU m8a Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-489-3p tatGATGTCAgttgg GUGACAUC m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-5588-5p tatgATGCCAGTtgg ACUGGCAU m8a Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-6719-3p tatgATGTCAGttgg UCUGACAU m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-888-3p tatgaTGTCAGTtgg GACUGACA m7b Created HHFKP_38800_cluster-6099_7_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553242T>C COSM172807 TCGA-AG-A002-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1237-5p cagttgGCCCCCatc CGGGGGCG m6b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-128-2-5p cagttGGCCCCCatc GGGGGCCG m7a Created HHFKP_38800_cluster-6099_7_8
hsa-miR-3144-5p cagttGGTCCCCatc AGGGGACC m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-4488 cagttgGCCCCCatc AGGGGGCG m6b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-4652-5p cagttgGTCCCCatc AGGGGACU m6b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-4697-5p cagttgGCCCCCatc AGGGGGCG m6b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-6762-5p cagtTGGCCCCcatc CGGGGCCA m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-6810-5p cagttgGTCCCCATc AUGGGGAC m8a Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-6845-5p cagtTGGCCCCcatc CGGGGCCA m7b Created HHFKP_38800_cluster-6099_7_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553227A>G COSM3468032 TCGA-EB-A57M-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-551a aTGGGTCGtgtggct GCGACCCA m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-551b-3p aTGGGTCGtgtggct GCGACCCA m7b Created HHFKP_38800_cluster-6099_7_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553217G>C COSM1562319 TCGA-DY-A0XA-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-671-5p tggcttgGGCTTCCc AGGAAGCC m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-7706 tggcttGCGCTTCcc UGAAGCGC m7b Created HHFKP_38800_cluster-6099_7_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27553212C>T COSM3885157 TCGA-FW-A3R5-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-204-3p tgggcTTCCCAGgta GCUGGGAA m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-3690 tgggcttTCCAGGTa ACCUGGAC m7a Created HHFKP_38800_cluster-6099_7_8
hsa-miR-3978 tgggCTTTCCAggta GUGGAAAG m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-4646-5p tgggcTTCCCAGgta ACUGGGAA m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-4747-5p tgggCTTCCCaggta AGGGAAGG m6b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-5196-5p tgggCTTCCCaggta AGGGAAGG m6b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-619-3p tgggcttTCCAGGTa GACCUGGA m7b Created HHFKP_38800_cluster-6099_7_8
hsa-miR-671-5p tgGGCTTCCcaggta AGGAAGCC m7b (m7b->m6b) HHFKP_38800_cluster-6099_7_8
hsa-miR-6742-3p tgggcttCCCAGGTa ACCUGGGU m7a Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-7851-3p tgggcttCCCAGGTa UACCUGGG m7b Disrupted HHFKP_38800_cluster-6099_7_8
hsa-miR-875-3p tgggcTTTCCAGGta CCUGGAAA m8a Created HHFKP_38800_cluster-6099_7_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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