SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0000468
Gene Symbol: LNX2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581588A>G COSM4652383 SNU-C4 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581563C>A COSM946445 TCGA-BG-A0M8-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-370-5p atgaTGACCTagtct CAGGUCAC m6b Disrupted HHFCT_40180_cluster-6099_14_8
hsa-miR-5000-5p atgaTGAACTagtct CAGUUCAG m6b Created HHFCT_40180_cluster-6099_14_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581559G>C COSM4152736 TCGA-P5-A5EV-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4771 tgacctAGTCTGCca AGCAGACU m7b Disrupted HHFCT_40180_cluster-6099_14_8

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581450C>A COSM1470723 TCGA-CH-5769-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3660 ttCTGTCAGTtggac ACUGACAG m8a Created HHFCT_40179_cluster-6099_13_213
hsa-miR-4526 ttCTGTCAGttggac GCUGACAG m7b (m6b->m7b) HHFCT_40179_cluster-6099_13_213
hsa-miR-888-3p ttcTGTCAGTtggac GACUGACA m7b Created HHFCT_40179_cluster-6099_13_213

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581436A>T COSM4046817 TCGA-BR-8680-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1264 ccggaaAAGACTTca CAAGUCUU m7b Disrupted HHFCT_40179_cluster-6099_13_213

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581435G>T COSM946444 TCGA-AX-A0J0-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1264 cggaaAAGACTTcat CAAGUCUU m7b Disrupted HHFCT_40179_cluster-6099_13_213
hsa-miR-548ao-5p cggaaaaTACTTCat AGAAGUAA m6b Created HHFCT_40179_cluster-6099_13_213
hsa-miR-548ax cggaaaaTACTTCat AGAAGUAA m6b Created HHFCT_40179_cluster-6099_13_213

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581430C>T COSM1747388 B70 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-142-5p aagACTTTATtttaa CAUAAAGU m7b Created HHFCT_40179_cluster-6099_13_213
hsa-miR-3184-3p aAGACTTTattttaa AAAGUCUC m7a Created HHFCT_40179_cluster-6099_13_213
hsa-miR-3646 aagacTTCATTTTaa AAAAUGAA m8a Disrupted HHFCT_40179_cluster-6099_13_213
hsa-miR-3662 aagactTCATTTTaa GAAAAUGA m7b Disrupted HHFCT_40179_cluster-6099_13_213
hsa-miR-5590-3p aagACTTTATTttaa AAUAAAGU m8a Created HHFCT_40179_cluster-6099_13_213
hsa-miR-6507-3p aaGACTTTattttaa CAAAGUCC m6b Created HHFCT_40179_cluster-6099_13_213

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581360C>A COSM1677569 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4694-3p ttatgTCCATTTtct CAAAUGGA m7b Disrupted HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-489-3p ttATGTCAattttct GUGACAUC m6b Created HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-4694-3p ttatgTCCATTTtct CAAAUGGA m7b Disrupted HPKTA_17181_G18541.1_28155484
hsa-miR-489-3p ttATGTCAattttct GUGACAUC m6b Created HPKTA_17181_G18541.1_28155484
hsa-miR-4694-3p ttatgTCCATTTtct CAAAUGGA m7b Disrupted HPRO6_23075_G27024.1_28155484
hsa-miR-489-3p ttATGTCAattttct GUGACAUC m6b Created HPRO6_23075_G27024.1_28155484

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581354C>G COSM4489651 CSCC-31-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3185 ccattTTCTTCagtg AGAAGAAG m6b Disrupted HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-4724-5p ccattttGTTCAGTg AACUGAAC m7b Created HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-3185 ccattTTCTTCagtg AGAAGAAG m6b Disrupted HPKTA_17181_G18541.1_28155484
hsa-miR-4724-5p ccattttGTTCAGTg AACUGAAC m7b Created HPKTA_17181_G18541.1_28155484
hsa-miR-3185 ccattTTCTTCagtg AGAAGAAG m6b Disrupted HPRO6_23075_G27024.1_28155484
hsa-miR-4724-5p ccattttGTTCAGTg AACUGAAC m7b Created HPRO6_23075_G27024.1_28155484

Mutation Mutation ID Sample Name Cancer Type
chr13:g.27581351C>T COSM4489858 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p ttTTCTTTagtgtgc CAAAGAAU m6b Created HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-3185 ttTTCTTCagtgtgc AGAAGAAG m6b Disrupted HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-4744 tttTCTTTAGtgtgc UCUAAAGA m7b Created HHKTA_38545_NM_153371|634|673|1.99032528838083|0.172057747027166
hsa-miR-186-5p ttTTCTTTagtgtgc CAAAGAAU m6b Created HPKTA_17181_G18541.1_28155484
hsa-miR-3185 ttTTCTTCagtgtgc AGAAGAAG m6b Disrupted HPKTA_17181_G18541.1_28155484
hsa-miR-4744 tttTCTTTAGtgtgc UCUAAAGA m7b Created HPKTA_17181_G18541.1_28155484
hsa-miR-186-5p ttTTCTTTagtgtgc CAAAGAAU m6b Created HPRO6_23075_G27024.1_28155484
hsa-miR-3185 ttTTCTTCagtgtgc AGAAGAAG m6b Disrupted HPRO6_23075_G27024.1_28155484
hsa-miR-4744 tttTCTTTAGtgtgc UCUAAAGA m7b Created HPRO6_23075_G27024.1_28155484

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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