SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002315
Gene Symbol: LMO1
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr11:g.8254240G>A COSN5710163 HX26T [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1301-5p ccggcgTAGAGCagt CGCUCUAG m6b Created HHFCT_24165_cluster-4073_9_9
hsa-miR-6502-5p ccggcgTAGAGCagt AGCUCUAG m6b Created HHFCT_24165_cluster-4073_9_9

Mutation Mutation ID Sample Name Cancer Type
chr11:g.8232504C>T COSN7287754 8067246 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3649 tccAGGTCCCactct AGGGACCU m7b Disrupted HHFKP_22878_cluster-4073_4_8
hsa-miR-3661 tCCAGGTCccactct UGACCUGG m7b Disrupted HHFKP_22878_cluster-4073_4_8
hsa-miR-4481 tccaggtCCCACTCt GGAGUGGG m7b Disrupted HHFKP_22878_cluster-4073_4_8
hsa-miR-4648 tccagGTCCCACtct UGUGGGAC m7b Disrupted HHFKP_22878_cluster-4073_4_8
hsa-miR-4745-5p tccaggtCCCACTCt UGAGUGGG m7b Disrupted HHFKP_22878_cluster-4073_4_8
hsa-miR-490-3p tCCAGGTTccactct CAACCUGG m7b Created HHFKP_22878_cluster-4073_4_8
hsa-miR-492 tcCAGGTCCcactct AGGACCUG m7b (m7b->m6b) HHFKP_22878_cluster-4073_4_8

Mutation Mutation ID Sample Name Cancer Type
chr11:g.8224646C>T COSM458359 TCGA-DS-A0VM-01 [cervix][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4487 ggCAGCTCaatggca AGAGCUGG m6b Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-558 gGCAGCTCAatggca UGAGCUGC m8a (m8a->m7a) HHFCT_24157_cluster-4073_1_8

Mutation Mutation ID Sample Name Cancer Type
chr11:g.8224640C>T COSM4874016 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-18a-5p tcaatgGCACCTTtg UAAGGUGC m7b Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-18b-5p tcaatgGCACCTTtg UAAGGUGC m7b Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-4735-3p tcaatgGCACCTTTg AAAGGUGC m8a Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-548m tcaatggTACCTTTg CAAAGGUA m7b Created HHFCT_24157_cluster-4073_1_8
hsa-miR-18a-5p tcaatgGCACCTTtg UAAGGUGC m7b Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-18b-5p tcaatgGCACCTTtg UAAGGUGC m7b Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-4735-3p tcaatgGCACCTTTg AAAGGUGC m8a Disrupted HHFCT_24157_cluster-4073_1_8
hsa-miR-548m tcaatggTACCTTTg CAAAGGUA m7b Created HHFCT_24157_cluster-4073_1_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser