SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001007527
Gene Symbol: LMBRD2
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36122435G>A COSM1067600 TCGA-P5-A5EV-01 [central_nervous_system][brain][glioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr5:g.36122423A>C COSM1579267 Case4 [fallopian_tube][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4659a-5p caagtacCATGGCAg CUGCCAUG m7b Created HHFKP_112884_cluster-18534_13_16
hsa-miR-4659b-5p caagtacCATGGCAg UUGCCAUG m7b Created HHFKP_112884_cluster-18534_13_16
hsa-miR-5579-5p caaGTACCATggcag UAUGGUAC m7b Created HHFKP_112884_cluster-18534_13_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36122412C>A COSM1695604 YUSCO [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p gcagATTCTTTtgga CAAAGAAU m7b Disrupted HHFKP_112884_cluster-18534_13_16
hsa-miR-5692a gcagATTATTTtgga CAAAUAAU m7b Created HHFKP_112884_cluster-18534_13_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36122411T>G COSM1067599 TCGA-BS-A0UJ-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p cagATTCTTTtggaa CAAAGAAU m7b Disrupted HHFKP_112884_cluster-18534_13_16

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36122371AT>T COSM1437214 pfg143T [stomach][NS][carcinoma][intestinal_adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p gcaaAAAATGaaacta ACAUUUUC m6b Disrupted HHFKP_112883_cluster-18534_11_12
hsa-miR-153-5p gcaAAAAATGAaacta UCAUUUUU m8a Disrupted HHFKP_112883_cluster-18534_11_12
hsa-miR-5696 gcaaaAAATGAaacta CUCAUUUA m6b Disrupted HHFKP_112883_cluster-18534_11_12
hsa-miR-579-3p gcaaaAAATGAAacta UUCAUUUG m7a Disrupted HHFKP_112883_cluster-18534_11_12
hsa-miR-664b-3p gcaaaAAATGAAacta UUCAUUUG m7a Disrupted HHFKP_112883_cluster-18534_11_12

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36105179G>T COSM592348 TCGA-73-4670-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-129-1-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPRO6_62379_G74680.1_36105284
hsa-miR-129-2-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPRO6_62379_G74680.1_36105284
hsa-miR-4687-5p tataccAGGGCTaat CAGCCCUC m6b Disrupted HPRO6_62379_G74680.1_36105284
hsa-miR-4774-5p tATACCAGggctaat UCUGGUAU m7b Disrupted HPRO6_62379_G74680.1_36105284
hsa-miR-6779-3p tatacCAGGGCTaat AAGCCCUG m7b Disrupted HPRO6_62379_G74680.1_36105284
hsa-miR-129-1-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-129-2-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-4687-5p tataccAGGGCTaat CAGCCCUC m6b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-4774-5p tATACCAGggctaat UCUGGUAU m7b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-6779-3p tatacCAGGGCTaat AAGCCCUG m7b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-129-1-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPTK1_23842_G28565.1_36105284
hsa-miR-129-2-3p tataccAGGGCTaat AAGCCCUU m6b Disrupted HPTK1_23842_G28565.1_36105284
hsa-miR-4687-5p tataccAGGGCTaat CAGCCCUC m6b Disrupted HPTK1_23842_G28565.1_36105284
hsa-miR-4774-5p tATACCAGggctaat UCUGGUAU m7b Disrupted HPTK1_23842_G28565.1_36105284
hsa-miR-6779-3p tatacCAGGGCTaat AAGCCCUG m7b Disrupted HPTK1_23842_G28565.1_36105284

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36105170A>G COSM4402478 TCGA-D9-A6EC-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-3p gctaatAACAGGact CCCUGUUC m6b Disrupted HPTA1_9136_G13166.1_36105280
hsa-miR-370-3p gctaatAGCAGGact GCCUGCUG m6b Created HPTA1_9136_G13166.1_36105280
hsa-miR-6893-3p gctaatAGCAGGact CCCUGCUG m6b Created HPTA1_9136_G13166.1_36105280

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36104080C>T COSM186542 TCGA-AA-3877-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3913-3p tatctctTGATGTCt AGACAUCA m7b Created HHFKP_112878_cluster-18534_6_24

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36104071G>T COSM4996551 NPC28F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181b-2-3p atgtctcTCAGTGAc CUCACUGA m7b Created HHFKP_112878_cluster-18534_6_24
hsa-miR-181b-3p atgtctcTCAGTGAc CUCACUGA m7b Created HHFKP_112878_cluster-18534_6_24
hsa-miR-4420 atgtctcTCAGTGAc GUCACUGA m7b Created HHFKP_112878_cluster-18534_6_24
hsa-miR-6068 atgtCTCGCAGtgac CCUGCGAG m7b Disrupted HHFKP_112878_cluster-18534_6_24
hsa-miR-6761-5p atgtCTCTCAGtgac UCUGAGAG m7b Created HHFKP_112878_cluster-18534_6_24
hsa-miR-6890-3p atgtctcGCAGTGac CCACUGCC m6b Disrupted HHFKP_112878_cluster-18534_6_24

Mutation Mutation ID Sample Name Cancer Type
chr5:g.36104066G>A COSM737933 TCGA-34-5232-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4420 tcgCAGTGACatatt GUCACUGA m7a Disrupted HHFKP_112878_cluster-18534_6_24
hsa-miR-6890-3p tcGCAGTGacatatt CCACUGCC m6b Disrupted HHFKP_112878_cluster-18534_6_24

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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