SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_004235
Gene Symbol: KLF4
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr9:g.107488059C>T COSM4488647 CSCC-27-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-545-3p tccaaTTTGCTGAcc UCAGCAAA m8a Created HHFCT_157965_cluster-23456_5_763
hsa-miR-545-3p tccaaTTTGCTGAcc UCAGCAAA m8a Created HHKTA_26893_NM_004235|903|942|2.76914822731245|0.290649611320891

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107488053C>T COSM4588329 A673 [soft_tissue][NS][sarcoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3134 tcgctgATCCATCct UGAUGGAU m7b Created HHFCT_157965_cluster-23456_5_763
hsa-miR-3134 tcgctgATCCATCct UGAUGGAU m7b Created HHKTA_26893_NM_004235|903|942|2.76914822731245|0.290649611320891

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107488009T>C COSM1459180 TCGA-CA-6717-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3929 gtcagcgTCAGCCTc GAGGCUGA m7b Disrupted HHKTB_1930_NM_004235|951|990|44.7534828983682|0.290649611320891
hsa-miR-4419b gtcagcgTCAGCCTc GAGGCUGA m7b Disrupted HHKTB_1930_NM_004235|951|990|44.7534828983682|0.290649611320891
hsa-miR-4478 gtcagcgTCAGCCTc GAGGCUGA m7b Disrupted HHKTB_1930_NM_004235|951|990|44.7534828983682|0.290649611320891
hsa-miR-6825-3p GTCAGCGCcagcctc GCGCUGAC m8a Created HHKTB_1930_NM_004235|951|990|44.7534828983682|0.290649611320891

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487999C>G COSM752141 TCGA-34-5929-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4459 gCCTCCTGttcgtcg CCAGGAGG m7b Created HHKTB_1930_NM_004235|951|990|44.7534828983682|0.290649611320891

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487163G>T COSM1103646 TCGA-AP-A0LG-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-202-5p catgcCATAGGAgcc UUCCUAUG m7b Created HHFKP_145758_cluster-23456_13_236
hsa-miR-326 catgCCAGAGGagcc CCUCUGGG m7a Disrupted HHFKP_145758_cluster-23456_13_236
hsa-miR-4268 catgccaGAGGAGCc GGCUCCUC m7b Disrupted HHFKP_145758_cluster-23456_13_236
hsa-miR-4642 cATGCCATaggagcc AUGGCAUC m7a Created HHFKP_145758_cluster-23456_13_236
hsa-miR-6780a-3p catgcCAGAGGAGcc CUCCUCUG m8a Disrupted HHFKP_145758_cluster-23456_13_236

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487067A>C COSM248828 MN-1076 [meninges][NS][meningioma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3664-5p ctacacACAGAGTTc AACUCUGU m8a Created HHFKP_145757_cluster-23456_12_184
hsa-miR-5010-3p ctACACAAAgagttc UUUUGUGU m7b (m7b->m6b) HHFKP_145757_cluster-23456_12_184
hsa-miR-599 ctACACAAagagttc GUUGUGUC m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-6844 ctacACAAAGAgttc UUCUUUGU m7b Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487065G>C COSM1132631 TCGA-G9-6363-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-452-5p acacAAACAGTTccc AACUGUUU m8a Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4676-3p acacAAACAGTtccc CACUGUUU m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4680-5p acacaaAGAGTTCcc AGAACUCU m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-6844 acACAAAGAgttccc UUCUUUGU m7b (m7b->m6b) HHFKP_145757_cluster-23456_12_184
hsa-miR-892c-3p acacAAACAGTtccc CACUGUUU m7b Created HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487060C>T COSM4408312 LP6005334-DNA_C03 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3688-3p aagagTTTCCATctc UAUGGAAA m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4261 aagaGTTTCCatctc AGGAAACA m6b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4471 aagAGTTCCCAtctc UGGGAACU m8a Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4680-5p aAGAGTTCccatctc AGAACUCU m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-8059 aagAGTTCCCatctc GGGGAACU m7b Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487060C>A COSM4389660 8053106 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4471 aagAGTTCCCAtctc UGGGAACU m8a Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4680-5p aAGAGTTCccatctc AGAACUCU m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-8059 aagAGTTCCCatctc GGGGAACU m7b Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487055C>T COSM1285800 NB-1972 [autonomic_ganglia][NS][neuroblastoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f ttcCCATCTCaaggc GGAGAUGG m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-143-3p ttccCATCTCAaggc UGAGAUGA m7a Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-203a-3p ttccCATTTCAaggc GUGAAAUG m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4708-5p ttccCATCTCaaggc AGAGAUGC m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4770 ttccCATCTCAaggc UGAGAUGA m7a Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-6088 ttccCATCTCaaggc AGAGAUGA m6b Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487049G>A COSM1103644 TCGA-AX-A0J1-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1271-3p tctcaAGGCACacct AGUGCCUG m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-3650 tctcaagACACACCt AGGUGUGU m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4312 tctCAAGGCacacct GGCCUUGU m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4711-3p tctcAAGACACacct CGUGUCUU m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-511-5p tctcAAGACACacct GUGUCUUU m7a Created HHFKP_145757_cluster-23456_12_184
hsa-miR-526b-5p tCTCAAGAcacacct CUCUUGAG m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-550a-3-5p tctcaAGGCACacct AGUGCCUG m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-550a-5p tctcaAGGCACacct AGUGCCUG m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-550b-2-5p tctcaAGGCACAcct AUGUGCCU m7b Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487046C>T COSM1459178 TCGA-CM-6171-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3665 caaggcaCACCTGCg AGCAGGUG m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-3934-5p caaggcACACCTGcg UCAGGUGU m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4633-5p caAGGCATAcctgcg AUAUGCCU m7b (m6b->m7b) HHFKP_145757_cluster-23456_12_184
hsa-miR-550b-2-5p caAGGCACAcctgcg AUGUGCCU m7b (m7b->m6b) HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487040C>T COSM1243357 ESO-081 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3665 aCACCTGCgaaccca AGCAGGUG m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-513a-5p acaCCTGTGAAccca UUCACAGG m8a Created HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487039G>A COSM3902837 TCGA-BR-4292-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-5p cacctgcGAACCCac GGGGUUCC m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-5087 cacctgCAAACCCac GGGUUUGU m7a Created HHFKP_145757_cluster-23456_12_184
hsa-miR-6511b-5p caCCTGCAaacccac CUGCAGGC m6b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-6811-5p caCCTGCAaacccac AUGCAGGC m6b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-6839-3p cacctgcAAACCCAc UUGGGUUU m7b Created HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107487037A>G COSM1581122 RCK8 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][diffuse_large_B_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-23a-5p cctgcGAACCCacac GGGGUUCC m6b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-3620-5p cctgcgAGCCCACac GUGGGCUG m7a Created HHFKP_145757_cluster-23456_12_184
hsa-miR-3940-5p cctgcgAACCCACac GUGGGUUG m7a Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-4265 cctgcgaGCCCACAc CUGUGGGC m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4296 cctgcgaGCCCACAc AUGUGGGC m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4322 cctgcgaGCCCACAc CUGUGGGC m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4417 cctgcgAGCCCACac GGUGGGCU m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-4674 cctgcGAGCCCAcac CUGGGCUC m7b Created HHFKP_145757_cluster-23456_12_184
hsa-miR-6759-5p cctgcgaACCCACAc UUGUGGGU m7b Disrupted HHFKP_145757_cluster-23456_12_184
hsa-miR-6793-5p cctgcgAACCCACAc UGUGGGUU m8a Disrupted HHFKP_145757_cluster-23456_12_184

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107485152A>T COSN9275066 C0031T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3974 aTGACCTTagtcagg AAAGGUCA m7b Created HHFKP_145749_cluster-23456_3_213

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107485011A>G COSN9694339 AOCS-081-1-1 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-376c-3p ttTCTATGTagttcc AACAUAGA m7b (m6b->m7b) HHFKP_145747_cluster-23456_1_919

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107484986T>C COSN9275065 C0021T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-25-3p aaataTGCAATataa CAUUGCAC m6b Created HHFCT_157961_cluster-23456_1_89
hsa-miR-363-3p aaataTGCAATataa AAUUGCAC m6b Created HHFCT_157961_cluster-23456_1_89
hsa-miR-367-3p aaataTGCAATataa AAUUGCAC m6b Created HHFCT_157961_cluster-23456_1_89
hsa-miR-448 aaATATGCAAtataa UUGCAUAU m8a Created HHFCT_157961_cluster-23456_1_89
hsa-miR-556-3p aaatatGTAATATaa AUAUUACC m7a Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-5580-3p aaATATGTaatataa CACAUAUG m6b Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-6504-3p aaataTGTAATataa CAUUACAG m6b Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-656-3p aaatatgTAATATaa AAUAUUAU m6b Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-25-3p aaataTGCAATataa CAUUGCAC m6b Created HHFKP_145747_cluster-23456_1_919
hsa-miR-363-3p aaataTGCAATataa AAUUGCAC m6b Created HHFKP_145747_cluster-23456_1_919
hsa-miR-367-3p aaataTGCAATataa AAUUGCAC m6b Created HHFKP_145747_cluster-23456_1_919
hsa-miR-448 aaATATGCAAtataa UUGCAUAU m8a Created HHFKP_145747_cluster-23456_1_919
hsa-miR-556-3p aaatatGTAATATaa AUAUUACC m7a Disrupted HHFKP_145747_cluster-23456_1_919
hsa-miR-5580-3p aaATATGTaatataa CACAUAUG m6b Disrupted HHFKP_145747_cluster-23456_1_919
hsa-miR-6504-3p aaataTGTAATataa CAUUACAG m6b Disrupted HHFKP_145747_cluster-23456_1_919
hsa-miR-656-3p aaatatgTAATATaa AAUAUUAU m6b Disrupted HHFKP_145747_cluster-23456_1_919

Mutation Mutation ID Sample Name Cancer Type
chr9:g.107484981T>C COSN9275064 C0057T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-556-3p tGTAATATaaattta AUAUUACC m7a Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-6083 tgtaATATAAattta CUUAUAUC m6b Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-656-3p tgTAATATaaattta AAUAUUAU m6b Disrupted HHFCT_157961_cluster-23456_1_89
hsa-miR-556-3p tGTAATATaaattta AUAUUACC m7a Disrupted HHFKP_145747_cluster-23456_1_919
hsa-miR-6083 tgtaATATAAattta CUUAUAUC m6b Disrupted HHFKP_145747_cluster-23456_1_919
hsa-miR-656-3p tgTAATATaaattta AAUAUUAU m6b Disrupted HHFKP_145747_cluster-23456_1_919

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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