SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions
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Prediction criteria:	TargetScan sites only     All 6mer or longer seed matches

Transcript ID:	NM_005853
Gene Symbol:	IRX5
Browse Associations

Somatic mutations that impact miRNA target sites

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933777T>G		COSM1378364	TCGA-CM-4743-01	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933756C>T		COSM4061245	TCGA-B7-5816-01	[stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-622	acCAGACTGTgttga	ACAGUCUG	m8a	Created	HHHNA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995
hsa-miR-622	acCAGACTGTgttga	ACAGUCUG	m8a	Created	HHHSA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933743G>T		COSM471825	TCGA-CZ-5982-01	[kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-374c-5p	ttcaaTGTATTAaac	AUAAUACA	m7b	Created	HHHNA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995
hsa-miR-655-3p	ttcaaTGTATTAaac	AUAAUACA	m7b	Created	HHHNA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995
hsa-miR-374c-5p	ttcaaTGTATTAaac	AUAAUACA	m7b	Created	HHHSA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995
hsa-miR-655-3p	ttcaaTGTATTAaac	AUAAUACA	m7b	Created	HHHSA_8730_IRX5|NM_005853|exon_CDS|-3.02245498842052|1.8190351864995

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933734A>G		COSM971528	TCGA-BG-A0VV-01	[endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-1252-3p	gggtCTCATTTcaat	CAAAUGAG	m7b	Disrupted	HHFKP_56382_cluster-8606_2_35
hsa-miR-203a-3p	gggtctCATTTCAat	GUGAAAUG	m7b	Disrupted	HHFKP_56382_cluster-8606_2_35
hsa-miR-510-3p	gggtctcGTTTCAAt	AUUGAAAC	m7b	Created	HHFKP_56382_cluster-8606_2_35

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933733C>T		COSM1302030	TCGA-G2-A2EO-01	[urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-1252-3p	ggggtCTCATTTcaa	CAAAUGAG	m7b	Disrupted	HHFKP_56382_cluster-8606_2_35
hsa-miR-203a-3p	ggggtctCATTTCAa	GUGAAAUG	m7b	Disrupted	HHFKP_56382_cluster-8606_2_35
hsa-miR-3667-5p	gGGGTCTTatttcaa	AAAGACCC	m7b	Created	HHFKP_56382_cluster-8606_2_35
hsa-miR-548ao-3p	ggGGTCTTatttcaa	AAAGACCG	m6b	Created	HHFKP_56382_cluster-8606_2_35

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933726G>T		COSM1378363	TCGA-G4-6315-01	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-6840-3p	ccggTCCTGGGtctc	GCCCAGGA	m7b	Created	HHFKP_56382_cluster-8606_2_35

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933725C>T		COSM4061244	TCGA-CG-5722-01	[stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933723T>A		COSM4627431	Gp2D	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54933720C>T		COSM4693144	T2950	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54931427G>A		COSM4061237	TCGA-CD-A4MG-01	[stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-3960	cgccgCCGCCGCCtt	GGCGGCGG	m8a	Disrupted	HHFCT_59129_cluster-8606_1_8
hsa-miR-4467	CGCCGCCAccgcctt	UGGCGGCG	m8a	Created	HHFCT_59129_cluster-8606_1_8
hsa-miR-6770-3p	cGCCGCCAccgcctt	CUGGCGGC	m7b	Created	HHFCT_59129_cluster-8606_1_8
hsa-miR-8072	cgccgCCGCCGCCtt	GGCGGCGG	m8a	Disrupted	HHFCT_59129_cluster-8606_1_8

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54931414GGCC>G		COSM4693134	T368	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-1199-3p	accccgCGGCCGCcgccg	UGCGGCCG	m7b	Disrupted	HHFCT_59129_cluster-8606_1_8
hsa-miR-1908-3p	accccGCGGCCGccgccg	CCGGCCGC	m7b	Disrupted	HHFCT_59129_cluster-8606_1_8
hsa-miR-3648	accCCGCGGCcgccgccg	AGCCGCGG	m7b	Disrupted	HHFCT_59129_cluster-8606_1_8

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54931409C>A		COSM1290540	CLL086	[haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][chronic_lymphocytic_leukaemia-small_lymphocytic_lymphoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-7704	cgcCGACCCCGcggc	CGGGGUCG	m8a	Disrupted	HHFCT_59129_cluster-8606_1_8

Mutation		Mutation ID	Sample Name	Cancer Type
chr16:g.54931405C>T		COSM4693133	T2940	[large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID	miRSite	miRSeed	SeedClass	FuncClass	Cluster ID
hsa-miR-1469	acgGCGCCGAccccg	CUCGGCGC	m7b	Disrupted	HHFCT_59129_cluster-8606_1_8
hsa-miR-6789-3p	acGGCGCCGaccccg	CGGCGCCC	m7a	(m7a->m6a)	HHFCT_59129_cluster-8606_1_8
hsa-miR-7704	acggcgcCGACCCCg	CGGGGUCG	m7b	Disrupted	HHFCT_59129_cluster-8606_1_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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