SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_000575
Gene Symbol: IL1A
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.112779605G>A COSM3406796 TCGA-14-0740-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-340-5p aCTTTATAAggatca UUAUAAAG m8a (m7a->m8a) HHFKP_77382_uc002tig.1_10_19
hsa-miR-6891-3p actttATGAGGatca CCCUCAUC m6b Disrupted HHFKP_77382_uc002tig.1_10_19

Mutation Mutation ID Sample Name Cancer Type
chr2:g.112779589G>T COSM1669222 PC-3 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-183-3p caaatacTAATTCAt GUGAAUUA m7b Created HHFKP_77382_uc002tig.1_10_19
hsa-miR-4452 caaatacGAATTCAt UUGAAUUC m7b Disrupted HHFKP_77382_uc002tig.1_10_19

Mutation Mutation ID Sample Name Cancer Type
chr2:g.112779589G>A COSM3894544 TCGA-GN-A266-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4452 caaatacGAATTCAt UUGAAUUC m7b Disrupted HHFKP_77382_uc002tig.1_10_19

Mutation Mutation ID Sample Name Cancer Type
chr2:g.112774474G>A COSN9072659 AOCS-111-1-X [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-517c-3p aaaGCACGAaatgtt AUCGUGCA m6b Disrupted HHFKP_77379_uc002tig.1_5_15
hsa-miR-636 aAAGCACAaaatgtt UGUGCUUG m7a Created HHFKP_77379_uc002tig.1_5_15
hsa-miR-517b-3p aaaGCACGAaatgtt AUCGUGCA m6b Disrupted HHFKP_77379_uc002tig.1_5_15
hsa-miR-517a-3p aaaGCACGAaatgtt AUCGUGCA m6b Disrupted HHFKP_77379_uc002tig.1_5_15
hsa-miR-218-5p aAAGCACAAaatgtt UUGUGCUU m8a (m7a->m8a) HHFKP_77379_uc002tig.1_5_15
hsa-miR-2113 aaaGCACAAAatgtt AUUUGUGC m7b Created HHFKP_77379_uc002tig.1_5_15

Mutation Mutation ID Sample Name Cancer Type
chr2:g.112774103A>G COSN9072658 AOCS-120-3-6 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-452-3p taaaattAGATGAac CUCAUCUG m6b Disrupted HHFKP_77375_uc002tig.1_1_12
hsa-miR-4735-5p taAAATTAGatgaac CCUAAUUU m7b (m7b->m6b) HHFKP_77375_uc002tig.1_1_12
hsa-miR-4775 tAAAATTAgatgaac UUAAUUUU m7b Disrupted HHFKP_77375_uc002tig.1_1_12
hsa-miR-590-3p TAAAATTAgatgaac UAAUUUUA m8a Disrupted HHFKP_77375_uc002tig.1_1_12

Mutation Mutation ID Sample Name Cancer Type
chr2:g.112774081C>A COSN9072657 AOCS-139-6-3 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-218-2-3p tgacAACCATGagac CAUGGUUC m7a Disrupted HHFKP_77375_uc002tig.1_1_12
hsa-miR-4289 tgacaACAATGagac GCAUUGUG m6b Created HHFKP_77375_uc002tig.1_1_12
hsa-miR-494-5p tGACAACCatgagac AGGUUGUC m7b Disrupted HHFKP_77375_uc002tig.1_1_12
hsa-miR-6755-3p TGACAACAatgagac UGUUGUCA m8a Created HHFKP_77375_uc002tig.1_1_12
hsa-miR-6758-3p tgacaacAATGAGac ACUCAUUC m6b Created HHFKP_77375_uc002tig.1_1_12
hsa-miR-758-5p tgaCAACCATgagac GAUGGUUG m7b Disrupted HHFKP_77375_uc002tig.1_1_12

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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