SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018950
Gene Symbol: HLA-F
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725138C>G COSM311810 S00830 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6727-3p cTGGCAGGgggatgg UCCUGCCA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6729-3p ctggcagGGGGATGg UCAUCCCC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6752-3p ctGGCAGGGggatgg UCCCUGCC m7b (m6b->m7b) HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6801-3p ctgGCAGGGGgatgg ACCCCUGC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6810-3p ctgGCAGGGGgatgg UCCCCUGC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6727-3p cTGGCAGGgggatgg UCCUGCCA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6729-3p ctggcagGGGGATGg UCAUCCCC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6752-3p ctGGCAGGGggatgg UCCCUGCC m7b (m6b->m7b) HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6801-3p ctgGCAGGGGgatgg ACCCCUGC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6810-3p ctgGCAGGGGgatgg UCCCCUGC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725126C>T COSM1077286 TCGA-A5-A0VP-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725115C>G COSM451140 TCGA-D8-A147-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1915-3p taCCCTGGGGagatc CCCCAGGG m8a Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-2355-5p taccCTGGGGAgatc AUCCCCAG m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6764-5p taCCCTGGGgagatc UCCCAGGG m7b (m6b->m7b) HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6886-5p tacCCTGCGGagatc CCCGCAGG m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-1915-3p taCCCTGGGGagatc CCCCAGGG m8a Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-2355-5p taccCTGGGGAgatc AUCCCCAG m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6764-5p taCCCTGGGgagatc UCCCAGGG m7b (m6b->m7b) HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6886-5p tacCCTGCGGagatc CCCGCAGG m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725094G>T COSM3861326 TCGA-CG-5718-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6895-5p aggtgctTGGCCCTg CAGGGCCA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-7160-3p aggtgctGGGCCCTg CAGGGCCC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-3065-3p aGGTGCTGggccctg UCAGCACC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6895-5p aggtgctTGGCCCTg CAGGGCCA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-7160-3p aggtgctGGGCCCTg CAGGGCCC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725079C>T COSM1487571 TCGA-D8-A27M-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4757-5p catGAGGCCaccctg AGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6744-3p catGAGGCCaccctg GGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6790-3p catGAGGTCaccctg CGACCUCG m6b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6878-3p catGAGGCCAccctg CUGGCCUC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4757-5p catGAGGCCaccctg AGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6744-3p catGAGGCCaccctg GGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6790-3p catGAGGTCaccctg CGACCUCG m6b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6878-3p catGAGGCCAccctg CUGGCCUC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725078G>A COSM3861323 TCGA-BR-8360-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1293 ccatgagACCACCCt UGGGUGGU m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-323a-5p ccatgaGACCACCct AGGUGGUC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4483 ccatgagACCACCCt GGGGUGGU m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4757-5p ccatGAGGCCaccct AGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6744-3p ccatGAGGCCaccct GGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6843-3p ccatGAGACCAccct AUGGUCUC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6848-3p ccatGAGACCACcct GUGGUCUC m8a Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6878-3p ccatGAGGCCAccct CUGGCCUC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-1293 ccatgagACCACCCt UGGGUGGU m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-323a-5p ccatgaGACCACCct AGGUGGUC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4483 ccatgagACCACCCt GGGGUGGU m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4757-5p ccatGAGGCCaccct AGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6744-3p ccatGAGGCCaccct GGGCCUCU m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6843-3p ccatGAGACCAccct AUGGUCUC m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6848-3p ccatGAGACCACcct GUGGUCUC m8a Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6878-3p ccatGAGGCCAccct CUGGCCUC m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29725067C>A COSM3250849 SW620 [large_intestine][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273f cCCATCTCtgaccat GGAGAUGG m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-376a-3p cccaTCTATGAccat AUCAUAGA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-376b-3p cccaTCTATGAccat AUCAUAGA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-3919 cccaTCTCTGaccat GCAGAGAA m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4756-3p cccATCTCTGaccat CCAGAGAU m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6801-5p cccatcTCTGACCAt UGGUCAGA m8a Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-1273f cCCATCTCtgaccat GGAGAUGG m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-376a-3p cccaTCTATGAccat AUCAUAGA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-376b-3p cccaTCTATGAccat AUCAUAGA m7b Created HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-3919 cccaTCTCTGaccat GCAGAGAA m6b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-4756-3p cccATCTCTGaccat CCAGAGAU m7b Disrupted HHRBC_11005_BC3-2of3-SCL_7895
hsa-miR-6801-5p cccatcTCTGACCAt UGGUCAGA m8a Disrupted HHRBC_11005_BC3-2of3-SCL_7895

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29724305C>T COSM3861315 TCGA-BR-7851-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3648 tggaCCGCGGCggac AGCCGCGG m7b Disrupted HHRBL_12188_BCBL1-2of3-SCL_6442
hsa-miR-6084 tggaccgTGGCGGAc UUCCGCCA m7b Created HHRBL_12188_BCBL1-2of3-SCL_6442
hsa-miR-3648 tggaCCGCGGCggac AGCCGCGG m7b Disrupted HHRBL_12188_BCBL1-2of3-SCL_6442
hsa-miR-6084 tggaccgTGGCGGAc UUCCGCCA m7b Created HHRBL_12188_BCBL1-2of3-SCL_6442

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29724223C>T COSM4958702 CHC892T [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3186-5p cgacgGACGCCTcct CAGGCGUC m7b Disrupted HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-3612 cgacggaTGCCTCCt AGGAGGCA m7b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-4800-3p cGACGGATGcctcct CAUCCGUC m8a (m7a->m8a) HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-650 cgacggaTGCCTCCt AGGAGGCA m7b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-3186-5p cgacgGACGCCTcct CAGGCGUC m7b Disrupted HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-3612 cgacggaTGCCTCCt AGGAGGCA m7b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-4800-3p cGACGGATGcctcct CAUCCGUC m8a (m7a->m8a) HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-650 cgacggaTGCCTCCt AGGAGGCA m7b Created HHRBL_12187_BCBL1-2of3-SCL_8717

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29724205G>C COSM360982 LUAD-CHTN-MAD06-00678 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3688-5p tggcTGCCACatggg AGUGGCAA m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-885-3p tgGCTGCCacatggg AGGCAGCG m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-891a-3p tggcTGCCACatggg AGUGGCAC m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-3688-5p tggcTGCCACatggg AGUGGCAA m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-885-3p tgGCTGCCacatggg AGGCAGCG m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717
hsa-miR-891a-3p tggcTGCCACatggg AGUGGCAC m6b Created HHRBL_12187_BCBL1-2of3-SCL_8717

Mutation Mutation ID Sample Name Cancer Type
chr6:g.29724204C>T COSM1077284 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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