SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_002124
Gene Symbol: HLA-DRB1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589752G>C COSN8892467 B80-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1253 ctgtccTCTTCTCca AGAGAAGA m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4434 ctgtcctCTTCTCCa AGGAGAAG m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4436a cTGTCCTGttctcca GCAGGACA m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4516 ctgtcctCTTCTCCa GGGAGAAG m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4700-3p ctGTCCTGTtctcca CACAGGAC m7b (m7b->m6b) HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4773 ctgtcCTGTTCTcca CAGAACAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5000-3p cTGTCCTGttctcca UCAGGACA m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5197-3p ctgtcCTCTTCTcca AAGAAGAG m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5703 ctgtcctCTTCTCCa AGGAGAAG m7b Created HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589729A>G COSM4160983 SCC-25 [upper_aerodigestive_tract][head_neck][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2114-3p tgtctGAGGCTCcct CGAGCCUC m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4300 tgtctgaAGCTCCCt UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5591-5p tgtctgaAGCTCCCt UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6726-5p tgtctgaAGCTCCCt CGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6823-3p tgtctGAGGCTCcct UGAGCCUC m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6827-5p tgtctgaGGCTCCCt UGGGAGCC m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-920 tgtctgaAGCTCCCt GGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589727C>T COSM4006432 SCC-25 [upper_aerodigestive_tract][head_neck][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4270 tctgaagCTCCCTGg UCAGGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4300 tctgaAGCTCCCtgg UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4441 tctgaagCTCCCTGg ACAGGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4471 tctgaAGTTCCCtgg UGGGAACU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5591-5p tctgaAGCTCCCtgg UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6726-5p tctgaAGCTCCCtgg CGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6750-5p tctgaaGTTCCCTGg CAGGGAAC m8a Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6754-5p tctgaagCTCCCTGg CCAGGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6822-5p tctgaaGTTCCCTGg CAGGGAAC m8a Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-8059 tctgaAGTTCCCtgg GGGGAACU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-920 tctgaAGCTCCCtgg GGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589726T>C COSM4597434 SCC-25 [upper_aerodigestive_tract][head_neck][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4270 ctgaagCTCCCTGga UCAGGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4300 ctgaAGCTCCCtgga UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4441 ctgaagCTCCCTGga ACAGGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-5591-5p ctgaAGCTCCCtgga UGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6726-5p ctgaAGCTCCCtgga CGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6754-5p ctgaagCTCCCTGGa CCAGGGAG m8a Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6798-5p ctgaagCCCCCTGGa CCAGGGGG m8a Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6805-5p ctgaaGCCCCCTgga UAGGGGGC m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6846-5p ctgaAGCCCCCtgga UGGGGGCU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6848-5p ctgaAGCCCCCtgga UGGGGGCU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-7113-5p ctgaagcTCCCTGGa UCCAGGGA m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-920 ctgaAGCTCCCtgga GGGGAGCU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589720G>A COSM4160982 PTC-53C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2114-3p ctccctgGAGGCTCc CGAGCCUC m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-3127-5p ctCCCTGAaggctcc AUCAGGGC m6b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-3614-3p ctccctGAAGGCTcc UAGCCUUC m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4270 CTCCCTGAaggctcc UCAGGGAG m8a Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6754-5p CTCCCTGGaggctcc CCAGGGAG m8a Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6823-3p ctccctgGAGGCTCc UGAGCCUC m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6837-5p ctCCCTGGaggctcc ACCAGGGC m6b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-7113-5p cTCCCTGGAggctcc UCCAGGGA m8a (m8a->m7a) HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589712T>A COSM1443633 WSU-HN30 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3135b aggCTCCAGCatgac GGCUGGAG m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4722-5p aggCTCCTGCatgac GGCAGGAG m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4728-3p aggctcCAGCATGac CAUGCUGA m7a Created HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589709A>T COSM1443632 WSU-HN30 [upper_aerodigestive_tract][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-215-3p ctcctgcATGACAGc UCUGUCAU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6165 cTCCTGCTtgacagc CAGCAGGA m7b Created HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589706A>G COSM4160981 SCC-25 [upper_aerodigestive_tract][head_neck][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-215-3p ctgcATGACAGcgct UCUGUCAU m7b Disrupted HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4659a-5p ctgCATGGCAGcgct CUGCCAUG m8a Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4659b-5p ctgCATGGCAgcgct UUGCCAUG m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-4769-3p ctgcATGGCAGcgct UCUGCCAU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6817-5p ctgcATGGCAGcgct UCUGCCAU m7b Created HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589702C>T COSM4160980 PTC-54C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-383-3p atgacAGTGCTGaca ACAGCACU m7b Created HHRBC_11156_BC3-2of3-SCL_7686
hsa-miR-6760-3p atGACAGTGctgaca ACACUGUC m7b (m6b->m7b) HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589701G>T COSM3830227 PTC-54C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6501-3p tgacaGCTCTGacag CCAGAGCA m6b Created HHRBC_11156_BC3-2of3-SCL_7686

Mutation Mutation ID Sample Name Cancer Type
chr6:g.32589700C>T COSM1443631 B80-Tumor [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-505-3p gacagcGTTGACagt CGUCAACA m6b Created HHRBC_11156_BC3-2of3-SCL_7686

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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