SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_017551
Gene Symbol: GRID1
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Browse Pathways

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr10:g.85812469A>G COSN7073337 8044983 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-153-3p ccaCTATGCAtcact UUGCAUAG m7b Created HPRT3_4271_G5593.1_87572223
hsa-miR-3171 ccactATACATCact AGAUGUAU m7b Disrupted HPRT3_4271_G5593.1_87572223

Mutation Mutation ID Sample Name Cancer Type
chr10:g.85647396GGA>TTA COSM1139515 TCGA-75-6211-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548ay-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ab catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548au-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548as-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ar-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548aq-5p catttcaTTACTTTCca GAAAGUAA m8a Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ap-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548am-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ak catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ae-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548ad-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-6838-3p catttCAGGACTTtcca AAGUCCUG m8a Disrupted HHFCT_18351_cluster-3057_2_16
hsa-miR-548b-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548bb-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548c-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548d-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548h-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548i catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548j-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548o-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548w catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-548y catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-559 catttcaTTACTTTcca UAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-6507-3p catttcaGGACTTTcca CAAAGUCC m7b Disrupted HHFCT_18351_cluster-3057_2_16
hsa-miR-548a-5p catttcaTTACTTTcca AAAAGUAA m7b Created HHFCT_18351_cluster-3057_2_16
hsa-miR-3140-5p catTTCAGGactttcca ACCUGAAU m6b Disrupted HHFCT_18351_cluster-3057_2_16

Mutation Mutation ID Sample Name Cancer Type
chr10:g.85647387G>T COSM4411141 RMH002-R1 [kidney][NS][carcinoma][clear_cell_renal_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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