SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0055425
Gene Symbol: GGCX
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.85559043C>T COSM1409793 TCGA-AA-3663-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4286 ccaggAGTGGGGgct ACCCCACU m7b Created HHFKP_76795_cluster-13750_9_8
hsa-miR-483-3p ccAGGAGTGggggct UCACUCCU m7b (m6b->m7b) HHFKP_76795_cluster-13750_9_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85559038G>A COSM4640465 LIM1899 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4663 agcggggGCTCAGCt AGCUGAGC m7b Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-3943 agcGGGGGCTcagct UAGCCCCC m7b Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-1225-3p agcgGGGGCTCAgct UGAGCCCC m8a Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-1199-5p agcgggGGCTCAGct CCUGAGCC m7b Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-6769a-3p agcgGGGGCTCagct GAGCCCCU m7a Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-6751-3p agcgggGGCTCAGct ACUGAGCC m7b Disrupted HHFKP_76795_cluster-13750_9_8
hsa-miR-8077 agcggggACTCAGCt GGCUGAGU m7b Created HHFKP_76795_cluster-13750_9_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85558968C>T COSM2822645 3N26-VS-3T26 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6862-5p tgccctATGCCCact CGGGCAUG m6b Created HHFCT_82657_cluster-13750_7_16
hsa-miR-1268a tgccctACGCCCact CGGGCGUG m6b Disrupted HHFCT_82657_cluster-13750_7_16
hsa-miR-1268b tgccctACGCCCact CGGGCGUG m6b Disrupted HHFCT_82657_cluster-13750_7_16
hsa-miR-3945 tgcccTATGCCCact AGGGCAUA m7b Created HHFCT_82657_cluster-13750_7_16
hsa-miR-585-3p tgcccTACGCCCAct UGGGCGUA m8a Disrupted HHFCT_82657_cluster-13750_7_16
hsa-miR-4253 tgccctATGCCCact AGGGCAUG m6b Created HHFCT_82657_cluster-13750_7_16

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85558958C>A COSM1409792 TCGA-AD-6895-01 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-449b-5p cCACTGCCacttgac AGGCAGUG m7b Disrupted HHFCT_82657_cluster-13750_7_16
hsa-miR-449a cCACTGCCActtgac UGGCAGUG m8a (m8a->m7a) HHFCT_82657_cluster-13750_7_16
hsa-miR-34a-5p cCACTGCCActtgac UGGCAGUG m8a (m8a->m7a) HHFCT_82657_cluster-13750_7_16
hsa-miR-495-5p ccactGCAACTTgac GAAGUUGC m7b Created HHFCT_82657_cluster-13750_7_16
hsa-miR-6516-5p ccACTGCAActtgac UUUGCAGU m7b (m6b->m7b) HHFCT_82657_cluster-13750_7_16

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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