SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001142269
Gene Symbol: GGCX
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.85550748A>G COSM1208141 587376 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-103a-2-5p ggcAGAAGCagggcc AGCUUCUU m6b Created HHFKP_76789_cluster-13750_1_8
hsa-miR-146b-3p ggcagaaACAGGGCc UGCCCUGU m7b Disrupted HHFKP_76789_cluster-13750_1_8
hsa-miR-3173-5p ggcagaaGCAGGGCc UGCCCUGC m7b Created HHFKP_76789_cluster-13750_1_8
hsa-miR-3182 ggCAGAAGCagggcc GCUUCUGU m7a (m6a->m7a) HHFKP_76789_cluster-13750_1_8
hsa-miR-6738-3p GGCAGAAGcagggcc CUUCUGCC m8a Created HHFKP_76789_cluster-13750_1_8
hsa-miR-6799-3p ggcagaaGCAGGGCc UGCCCUGC m7b Created HHFKP_76789_cluster-13750_1_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85550727C>A COSM1023362 TCGA-AP-A0LM-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1184 cccagaGCTGCAGcc CCUGCAGC m7b Disrupted HHFKP_76789_cluster-13750_1_8
hsa-miR-1301-3p cccagAGCTGCAgcc UUGCAGCU m7b Disrupted HHFKP_76789_cluster-13750_1_8
hsa-miR-3191-5p cCCAGAGAtgcagcc CUCUCUGG m7b Created HHFKP_76789_cluster-13750_1_8
hsa-miR-330-5p CCCAGAGAtgcagcc UCUCUGGG m8a Created HHFKP_76789_cluster-13750_1_8
hsa-miR-4660 cccaGAGCTGCAgcc UGCAGCUC m8a Disrupted HHFKP_76789_cluster-13750_1_8
hsa-miR-5047 cccagAGCTGCAgcc UUGCAGCU m7b Disrupted HHFKP_76789_cluster-13750_1_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85550601C>T COSM1409787 TCGA-AZ-6601-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-34b-3p ccatgAGTGATTctt CAAUCACU m7b Created HHFCT_82653_cluster-13750_3_8
hsa-miR-6847-3p cCATGAGCgattctt GGCUCAUG m7b Disrupted HHFCT_82653_cluster-13750_3_8
Mutation Mutation ID Sample Name Cancer Type
chr2:g.85550596C>A COSM4686854 T578 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr2:g.85550590C>G COSM4686853 T204 [kidney][NS][Wilms_tumour][bilateral]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548b-3p tcttccGGTTCTTGt CAAGAACC m8a Created HHFCT_82653_cluster-13750_3_8

Mutation Mutation ID Sample Name Cancer Type
chr2:g.85549954C>T COSM4478653 CSCC-4-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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