SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_005233
Gene Symbol: EPHA3
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.89473871C>A COSN15305561 LP6005500-DNA_A01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-299-5p atagaTAAACCAaaa UGGUUUAC m7a Created HHRBC_8953_BC3-2of3-SCL_7312
hsa-miR-29b-2-5p atagatAAACCAaaa CUGGUUUC m6b Created HHRBC_8953_BC3-2of3-SCL_7312
hsa-miR-659-3p atagataAACCAAaa CUUGGUUC m6b Created HHRBC_8953_BC3-2of3-SCL_7312

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472554C>T COSM2828420 T55 [liver][NS][carcinoma][hepatocellular_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-106a-3p cagcaCATTGCAagg CUGCAAUG m7b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-4302 cagCACACTGcaagg CCAGUGUG m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-648 caGCACACTgcaagg AAGUGUGC m7b (m7b->m6b) HHFKP_103079_cluster-16010_3_8
hsa-miR-6499-3p cagcACACTGCaagg AGCAGUGU m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-6516-5p cagcacACTGCAAgg UUUGCAGU m7b Disrupted HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472547C>T COSM4120504 TCGA-BR-8487-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-626 gtctgGACAGCacac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-6876-3p gtctgGACAGCacac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472547C>A COSM4484148 CSCC-16-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-198 gTCTGGACagcacac GGUCCAGA m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-218-5p gtctggaAAGCACAc UUGUGCUU m7b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-3160-5p gtctgGAAAGCacac GGCUUUCU m6b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-626 gtctgGACAGCacac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-6876-3p gtctgGACAGCacac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472545G>T COSM1618126 HCC51 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-let-7a-2-3p gtgtCTGTACAGcac CUGUACAG m8a Created HHFKP_103079_cluster-16010_3_8
hsa-let-7g-3p gtgtCTGTACAGcac CUGUACAG m8a Created HHFKP_103079_cluster-16010_3_8
hsa-miR-1324 gTGTCTGGacagcac CCAGACAG m7a Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-1537-5p gtgtctgTACAGCac AGCUGUAA m6b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-198 gtgTCTGGACagcac GGUCCAGA m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-4718 gtgtctGTACAGCac AGCUGUAC m7b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-626 gtgtctgGACAGCac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-6876-3p gtgtctgGACAGCac AGCUGUCU m6b Disrupted HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472544G>T COSM1618125 HCC51 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1324 ggTGTCTGGacagca CCAGACAG m7a (m7a->m6a) HHFKP_103079_cluster-16010_3_8
hsa-miR-198 ggtgTCTGGACagca GGUCCAGA m7b Disrupted HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472543T>C COSM4002834 SNUH_G16_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1324 tggTGTCTGGacagc CCAGACAG m7a Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-198 tggtgTCTGGACagc GGUCCAGA m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-3687 tggTGTCCGGacagc CCCGGACA m7b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-4442 tggTGTCCGGacagc GCCGGACA m7b Created HHFKP_103079_cluster-16010_3_8

Mutation Mutation ID Sample Name Cancer Type
chr3:g.89472530G>A COSM731456 TCGA-22-4591-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-224-5p gtgacTGACTTaatg CAAGUCAC m6b Created HHFKP_103079_cluster-16010_3_8
hsa-miR-4676-5p gtgACTGGCTtaatg GAGCCAGU m7b Disrupted HHFKP_103079_cluster-16010_3_8
hsa-miR-4704-3p GTGACTGActtaatg UCAGUCAC m8a Created HHFKP_103079_cluster-16010_3_8
hsa-miR-575 gtgACTGGCTtaatg GAGCCAGU m7b Disrupted HHFKP_103079_cluster-16010_3_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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