SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001424
Gene Symbol: EMP2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.10532933T>TGT COSM4984798 1N50-VS-1T50 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-466 ggcatgATGTGTAcctg AUACACAU m7b Created HHFKP_52663_cluster-8917_11_88
hsa-miR-499a-3p ggcaTGATGTacctg AACAUCAC m6b Disrupted HHFKP_52663_cluster-8917_11_88
hsa-miR-499b-3p ggcaTGATGTacctg AACAUCAC m6b Disrupted HHFKP_52663_cluster-8917_11_88

Mutation Mutation ID Sample Name Cancer Type
chr16:g.10532921T>C COSM2141769 SNU-C4 [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-8088 ctgaTACCGAGGaag CCUCGGUA m8a Created HHFKP_52663_cluster-8917_11_88
hsa-miR-670-3p ctgatacTGAGGAAg UUUCCUCA m7b Disrupted HHFKP_52663_cluster-8917_11_88
hsa-miR-4798-5p ctgATACCGAggaag UUCGGUAU m7b Created HHFKP_52663_cluster-8917_11_88
hsa-miR-1238-3p ctgatacCGAGGAAg CUUCCUCG m7b Created HHFKP_52663_cluster-8917_11_88
hsa-miR-16-1-3p ctgATACTGaggaag CCAGUAUU m6b Disrupted HHFKP_52663_cluster-8917_11_88
hsa-miR-4797-3p ctgaTACTGAGgaag UCUCAGUA m7b Disrupted HHFKP_52663_cluster-8917_11_88

Mutation Mutation ID Sample Name Cancer Type
chr16:g.10532911C>G COSM1323731 TCGA-29-1691-01 [ovary][NS][carcinoma][serous_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-718 ggaaGCGGAAataga CUUCCGCC m6b Created HHFKP_52663_cluster-8917_11_88
hsa-miR-572 ggaAGCGGAaataga GUCCGCUC m6b Created HHFKP_52663_cluster-8917_11_88
hsa-miR-138-2-3p ggaagcgGAAATAGa GCUAUUUC m7b Created HHFKP_52663_cluster-8917_11_88

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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