SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_018371
Gene Symbol: CSGALNACT1
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505794G>A COSM4674915 T3503 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1247-3p attTCCCGGGtggtg CCCCGGGA m7b Disrupted HHFCT_149757_cluster-22256_29_9
hsa-miR-204-3p atTTCCCAGgtggtg GCUGGGAA m7b (m6b->m7b) HHFCT_149757_cluster-22256_29_9
hsa-miR-4646-5p atTTCCCAGgtggtg ACUGGGAA m7b (m6b->m7b) HHFCT_149757_cluster-22256_29_9
hsa-miR-6765-3p atttcCCAGGTGgtg UCACCUGG m7b Created HHFCT_149757_cluster-22256_29_9
hsa-miR-7851-3p atttCCCAGGTggtg UACCUGGG m7b Created HHFCT_149757_cluster-22256_29_9
Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505792G>T COSM604975 TCGA-64-1677-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505390G>A COSM3924977 TCGA-EB-A5SG-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-488-3p gCCTTTCAAtagctt UUGAAAGG m8a (m7a->m8a) HHFCT_149756_cluster-22256_28_13
hsa-miR-510-3p gccTTTCAATagctt AUUGAAAC m7a Created HHFCT_149756_cluster-22256_28_13
hsa-miR-488-3p gCCTTTCAAtagctt UUGAAAGG m8a (m7a->m8a) HHFKP_137944_cluster-22256_23_12
hsa-miR-510-3p gccTTTCAATagctt AUUGAAAC m7a Created HHFKP_137944_cluster-22256_23_12

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505275C>G COSM604672 TCGA-44-6145-01 [lung][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3929 gaaTCAGCCTtggag GAGGCUGA m7b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-4293 gaaTCAGGCTtggag CAGCCUGA m7b Created HHFKP_137943_cluster-22256_22_411
hsa-miR-4419b gaaTCAGCCTtggag GAGGCUGA m7b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-4478 gaaTCAGCCTtggag GAGGCUGA m7b Disrupted HHFKP_137943_cluster-22256_22_411

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505268G>T COSM3898663 TCGA-BR-8370-01 [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1178-5p ccttggaGACCCTGa CAGGGUCA m7a Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-1182 ccttggAGACCCTga GAGGGUCU m7b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-515-5p ccTTGGAGAccctga UUCUCCAA m7b (m7b->m6b) HHFKP_137943_cluster-22256_22_411
hsa-miR-519d-5p ccTTGGAGaccctga CCUCCAAA m6b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-519e-5p ccTTGGAGAccctga UUCUCCAA m7b (m7b->m6b) HHFKP_137943_cluster-22256_22_411
hsa-miR-5695 cCTTGGAGaccctga ACUCCAAG m7b Disrupted HHFKP_137943_cluster-22256_22_411

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19505257G>A COSM4162882 PTC-54C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1286 ctgaacaGTCCTGCa UGCAGGAC m7b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-3169 ctgaaCAGTCCTgca UAGGACUG m7b Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-4436a ctgaacaGTCCTGCa GCAGGACA m7a Disrupted HHFKP_137943_cluster-22256_22_411
hsa-miR-4445-5p ctgAACAATCctgca AGAUUGUU m7b Created HHFKP_137943_cluster-22256_22_411

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19408679A>G COSM1097807 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-145-5p gaaggaAACTGGAtt GUCCAGUU m7b Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-4328 gaaggAAACTGGatt CCAGUUUU m7a Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-516a-3p gaAGGAAGCtggatt UGCUUCCU m7b (m6b->m7b) HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-516b-3p gaAGGAAGCtggatt UGCUUCCU m7b (m6b->m7b) HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-5195-3p gaaggaAACTGGATt AUCCAGUU m8a Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-5586-5p gaaggaaGCTGGATt UAUCCAGC m7b Created HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-7162-5p gaAGGAAGCtggatt UGCUUCCU m7b (m6b->m7b) HHRBL_13902_BCBL1-2of3-SCL_3570

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19408652G>A COSM3721352 91 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-3p tggaTTTGGGatgac GCCCAAAG m6b Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-4733-5p tggatTTGGGATgac AAUCCCAA m7b Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-4793-5p tggatttAGGATGac ACAUCCUG m6b Created HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-5009-3p tggATTTAGGAtgac UCCUAAAU m8a Created HHRBL_13902_BCBL1-2of3-SCL_3570

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19408650G>A COSM3647048 TCGA-EE-A29M-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-3p gaTTTGGGatgacgt GCCCAAAG m6b Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570
hsa-miR-4733-5p gatTTGGGATgacgt AAUCCCAA m7b Disrupted HHRBL_13902_BCBL1-2of3-SCL_3570

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19405817G>C COSM3779127 TCGA-FD-A3SL-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3122 cacctTCCCAAacag GUUGGGAC m6b Created HHFKP_137932_cluster-22256_11_25
hsa-miR-450a-1-3p caccTTCCCAAacag AUUGGGAA m7b Created HHFKP_137932_cluster-22256_11_25
hsa-miR-450a-5p cacctTCGCAAAcag UUUUGCGA m7b Disrupted HHFKP_137932_cluster-22256_11_25
hsa-miR-4747-5p caCCTTCCCaaacag AGGGAAGG m7b (m6b->m7b) HHFKP_137932_cluster-22256_11_25
hsa-miR-5196-5p caCCTTCCCaaacag AGGGAAGG m7b (m6b->m7b) HHFKP_137932_cluster-22256_11_25
hsa-miR-6740-5p caccttCCCAAACag AGUUUGGG m7b Created HHFKP_137932_cluster-22256_11_25
hsa-miR-887-5p cacctTCCCAAacag CUUGGGAG m6b Created HHFKP_137932_cluster-22256_11_25

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19405744T>G COSN1084577 TCGA-AP-A056-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-651-3p tttttcTTTCCTTTt AAAGGAAA m8a Disrupted HHFKP_137931_cluster-22256_10_9
hsa-miR-8080 tttttcTGTCCTTtt GAAGGACA m7b Created HHFKP_137931_cluster-22256_10_9

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19405492C>T COSN524459 TCGA-A8-A083-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-223-5p tttacAATACACtga CGUGUAUU m7b Created HHFCT_149742_cluster-22256_14_10
hsa-miR-4302 tttacaaCACACTGa CCAGUGUG m7b Disrupted HHFCT_149742_cluster-22256_14_10

Mutation Mutation ID Sample Name Cancer Type
chr8:g.19404210G>T COSN8576018 tumor_4108101 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-5197-5p agGCCATTaatggaa CAAUGGCA m6b Created HHFCT_149730_cluster-22256_1_24
hsa-miR-885-5p aggccatTAATGGAa UCCAUUAC m7a Created HHFCT_149730_cluster-22256_1_24
hsa-miR-5197-5p agGCCATTaatggaa CAAUGGCA m6b Created HHFKP_137922_cluster-22256_1_240
hsa-miR-885-5p aggccatTAATGGAa UCCAUUAC m7a Created HHFKP_137922_cluster-22256_1_240

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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