SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0044570
Gene Symbol: COL1A1
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr17:g.50199789G>A COSM2698989 1N46-VS-1T46 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6763-5p agTCCCCAagggcga CUGGGGAG m6b Created HHFCT_63706_uc002iqm.1_26_17
hsa-miR-6777-5p agTCCCCGagggcga ACGGGGAG m6b Disrupted HHFCT_63706_uc002iqm.1_26_17
hsa-miR-6810-5p aGTCCCCAagggcga AUGGGGAC m7b Created HHFCT_63706_uc002iqm.1_26_17
hsa-miR-450a-2-3p agTCCCCAAgggcga AUUGGGGA m7b (m6b->m7b) HHFCT_63706_uc002iqm.1_26_17
hsa-miR-3150a-3p agTCCCCAagggcga CUGGGGAG m6b Created HHFCT_63706_uc002iqm.1_26_17
hsa-miR-3189-3p agtcCCCAAGGGcga CCCUUGGG m8a Created HHFCT_63706_uc002iqm.1_26_17
hsa-miR-1249-3p agtccccAAGGGCGa ACGCCCUU m7b Created HHFCT_63706_uc002iqm.1_26_17

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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