SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001289080
Gene Symbol: CNTN6
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr3:g.1390904G>A COSN14971550 LP6005409-DNA_E01 [oesophagus][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4715-3p aattGTGGCAataat GUGCCACC m6b Disrupted HPCB1_26228_G33308.1_1432598
hsa-miR-3064-3p aatTGTGGCAAtaat UUGCCACA m8a Disrupted HPCB1_26228_G33308.1_1432598
hsa-miR-5701 aattgtGACAATAAt UUAUUGUC m8a Created HPCB1_26228_G33308.1_1432598
hsa-miR-3064-3p aatTGTGGCAAtaat UUGCCACA m8a Disrupted HPCB1_26228_G33308.1_1432598
hsa-miR-4715-3p aattGTGGCAataat GUGCCACC m6b Disrupted HPCB1_26228_G33308.1_1432598
hsa-miR-5701 aattgtGACAATAAt UUAUUGUC m8a Created HPCB1_26228_G33308.1_1432598

Mutation Mutation ID Sample Name Cancer Type
chr3:g.1277354A>G COSN9237356 AOCS-149-1-7 [ovary][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser