SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001244644
Gene Symbol: CHMP2B
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.87254351A>G COSN1969938 RK089_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-548at-5p ctgtcaTAACTTTTc AAAAGUUA m8a Disrupted HPKTA_41762_G44935.1_87303517

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87253832G>C COSN1969937 RK041_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3168 aaaAGAACTCatact GAGUUCUA m7a Created HHKTA_19048_NM_014043|913|952|3.80757881255463|0.881617298202336
hsa-miR-5584-3p aaAAGAACTcatact UAGUUCUU m7b (m6b->m7b) HHKTA_19048_NM_014043|913|952|3.80757881255463|0.881617298202336
hsa-miR-617 aaaaGAAGTCatact AGACUUCC m6b Disrupted HHKTA_19048_NM_014043|913|952|3.80757881255463|0.881617298202336
hsa-miR-6505-3p aaaAGAAGTCAtact UGACUUCU m8a Disrupted HHKTA_19048_NM_014043|913|952|3.80757881255463|0.881617298202336
hsa-miR-3168 aaaAGAACTCatact GAGUUCUA m7a Created HPKTA_41761_G44934.1_87302994
hsa-miR-5584-3p aaAAGAACTcatact UAGUUCUU m7b (m6b->m7b) HPKTA_41761_G44934.1_87302994
hsa-miR-617 aaaaGAAGTCatact AGACUUCC m6b Disrupted HPKTA_41761_G44934.1_87302994
hsa-miR-6505-3p aaaAGAAGTCAtact UGACUUCU m8a Disrupted HPKTA_41761_G44934.1_87302994
hsa-miR-3168 aaaAGAACTCatact GAGUUCUA m7a Created HPRO6_53527_G63545.1_87303002
hsa-miR-5584-3p aaAAGAACTcatact UAGUUCUU m7b (m6b->m7b) HPRO6_53527_G63545.1_87303002
hsa-miR-617 aaaaGAAGTCatact AGACUUCC m6b Disrupted HPRO6_53527_G63545.1_87303002
hsa-miR-6505-3p aaaAGAAGTCAtact UGACUUCU m8a Disrupted HPRO6_53527_G63545.1_87303002
hsa-miR-3168 aaaAGAACTCatact GAGUUCUA m7a Created HPRO8_10060_G13370.1_87303001
hsa-miR-5584-3p aaAAGAACTcatact UAGUUCUU m7b (m6b->m7b) HPRO8_10060_G13370.1_87303001
hsa-miR-617 aaaaGAAGTCatact AGACUUCC m6b Disrupted HPRO8_10060_G13370.1_87303001
hsa-miR-6505-3p aaaAGAAGTCAtact UGACUUCU m8a Disrupted HPRO8_10060_G13370.1_87303001
hsa-miR-3168 aaaAGAACTCatact GAGUUCUA m7a Created HPRT3_17276_G22970.1_87302994
hsa-miR-5584-3p aaAAGAACTcatact UAGUUCUU m7b (m6b->m7b) HPRT3_17276_G22970.1_87302994
hsa-miR-617 aaaaGAAGTCatact AGACUUCC m6b Disrupted HPRT3_17276_G22970.1_87302994
hsa-miR-6505-3p aaaAGAAGTCAtact UGACUUCU m8a Disrupted HPRT3_17276_G22970.1_87302994

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87249937C>T COSM4491672 CSCC-44-T [skin][head_neck][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1299 agaatTTCCAGAAgg UUCUGGAA m8a Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-4766-5p agaatTTTCAGAagg UCUGAAAG m7a Created HHFCT_111048_uc003dqp.2_1_851
hsa-miR-5093 agaATTTCCagaagg AGGAAAUG m6b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-516b-5p agaattTCCAGAagg AUCUGGAG m6b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-6128 agaatTTCCAGaagg ACUGGAAU m6b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-875-3p agaaTTTCCAGaagg CCUGGAAA m7b Disrupted HHFCT_111048_uc003dqp.2_1_851

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87249933A>G COSM4978698 3N04-VS-3T04 [oesophagus][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4261 atgcagaGTTTCCag AGGAAACA m6b Created HHFCT_111048_uc003dqp.2_1_851
hsa-miR-5093 atgcagaATTTCCag AGGAAAUG m6b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-544a aTGCAGAATttccag AUUCUGCA m8a (m8a->m7a) HHFCT_111048_uc003dqp.2_1_851

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87249925A>C COSM4002831 SNUH_G10_S1 [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-20a-3p tacaaacAATGCAGa ACUGCAUU m7b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-33a-5p tacaaaCAATGCAga GUGCAUUG m7b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-33b-5p tacaaaCAATGCAga GUGCAUUG m7b Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-4289 tacaaACAATGCaga GCAUUGUG m7a Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-5011-3p tacaaaCCATGCAga GUGCAUGG m7b Created HHFCT_111048_uc003dqp.2_1_851
hsa-miR-5087 tACAAACCatgcaga GGGUUUGU m7b Created HHFCT_111048_uc003dqp.2_1_851
hsa-miR-8068 tACAAACAatgcaga UGUUUGUU m7a Disrupted HHFCT_111048_uc003dqp.2_1_851
hsa-miR-20a-3p tacaaacAATGCAGa ACUGCAUU m7b Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-33a-5p tacaaaCAATGCAga GUGCAUUG m7b Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-33b-5p tacaaaCAATGCAga GUGCAUUG m7b Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-4289 tacaaACAATGCaga GCAUUGUG m7a Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-5011-3p tacaaaCCATGCAga GUGCAUGG m7b Created HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-5087 tACAAACCatgcaga GGGUUUGU m7b Created HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-8068 tACAAACAatgcaga UGUUUGUU m7a Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87249922A>C COSM1425578 TCGA-AA-3510-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4289 cattacaCACAATGc GCAUUGUG m7b Created HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-6867-5p cattACACACAatgc UGUGUGUG m7a Created HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336
hsa-miR-8068 cattACAAACAatgc UGUUUGUU m7a Disrupted HHKTA_26125_NM_014043|599|638|2.85568410941597|0.881617298202336

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87231089C>T COSN9894993 C0057T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-185-5p atTCTCTCCctgcat UGGAGAGA m7b (m7b->m6b) HHFKP_103053_uc003dqp.2_2_23
hsa-miR-1909-3p attctctCCCTGCat CGCAGGGG m6b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-211-3p attctcTCCCTGCat GCAGGGAC m7a Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-4270 attctCTCCCTGcat UCAGGGAG m7b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-4306 atTCTCTCCctgcat UGGAGAGA m7b (m7b->m6b) HHFKP_103053_uc003dqp.2_2_23
hsa-miR-4441 attctCTCCCTGcat ACAGGGAG m7b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-4644 atTCTCTCCctgcat UGGAGAGA m7b (m7b->m6b) HHFKP_103053_uc003dqp.2_2_23
hsa-miR-4722-5p attctctTCCTGCat GGCAGGAG m6b Created HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6077 attCTCTTCCtgcat GGGAAGAG m7b Created HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6132 attctctCCCTGCat AGCAGGGC m6b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6731-5p attCTCTCCCtgcat UGGGAGAG m7b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6754-5p attctCTCCCTGcat CCAGGGAG m7b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6760-5p attcTCTCCCTGcat CAGGGAGA m8a Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-6836-5p attctctCCCTGCat CGCAGGGC m6b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-8085 attCTCTCCCtgcat UGGGAGAG m7b Disrupted HHFKP_103053_uc003dqp.2_2_23
hsa-miR-873-5p attctcTTCCTGCat GCAGGAAC m7a Created HHFKP_103053_uc003dqp.2_2_23

Mutation Mutation ID Sample Name Cancer Type
chr3:g.87227549C>T COSM1162456 PA107 [pancreas][NS][carcinoma][ductal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4328 agAAAACTGtggatg CCAGUUUU m7b (m6b->m7b) HHHNA_16578_CHMP2B|NM_014043|exon_CDS|-4.47942767437107|1.06363838677425
hsa-miR-5092 agaaaacCGTGGATg AAUCCACG m7b Disrupted HHHNA_16578_CHMP2B|NM_014043|exon_CDS|-4.47942767437107|1.06363838677425
hsa-miR-4328 agAAAACTGtggatg CCAGUUUU m7b (m6b->m7b) HHHNE_3755_CHMP2B|NM_014043|exon_CDS|-5.54449014531479|-0.351812326093755
hsa-miR-5092 agaaaacCGTGGATg AAUCCACG m7b Disrupted HHHNE_3755_CHMP2B|NM_014043|exon_CDS|-5.54449014531479|-0.351812326093755
hsa-miR-4328 agAAAACTGtggatg CCAGUUUU m7b (m6b->m7b) HHHSA_16578_CHMP2B|NM_014043|exon_CDS|-4.47942767437107|1.06363838677425
hsa-miR-5092 agaaaacCGTGGATg AAUCCACG m7b Disrupted HHHSA_16578_CHMP2B|NM_014043|exon_CDS|-4.47942767437107|1.06363838677425
hsa-miR-4328 agAAAACTGtggatg CCAGUUUU m7b (m6b->m7b) HHHSE_3755_CHMP2B|NM_014043|exon_CDS|-5.54449014531479|-0.351812326093755
hsa-miR-5092 agaaaacCGTGGATg AAUCCACG m7b Disrupted HHHSE_3755_CHMP2B|NM_014043|exon_CDS|-5.54449014531479|-0.351812326093755

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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