SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0039371
Gene Symbol: CHD9
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr16:g.53304101C>T COSM230320 ME049T [NS][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3135a tctctaCCTAGGCtc UGCCUAGG m7b Disrupted HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-3529-5p tcTCTACCTaggctc AGGUAGAC m7a (m7a->m6a) HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-3927-3p tcTCTACCTaggctc CAGGUAGA m7b (m7b->m6b) HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-4650-3p tcTCTACCTaggctc AGGUAGAA m7a (m7a->m6a) HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-562 tctCTACTTaggctc AAAGUAGC m6b Created HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-6831-5p tcTCTACCTAggctc UAGGUAGA m8a Disrupted HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-6832-5p TCTCTACTtaggctc AGUAGAGA m8a Created HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919

Mutation Mutation ID Sample Name Cancer Type
chr16:g.53304068T>C COSM3510235 TCGA-BF-A1Q0-01 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1273e taTCAAGCAgcactt UUGCUUGA m7b (m6b->m7b) HHFCT_59042_cluster-8603_10_16
hsa-miR-138-1-3p tatcAAGTAGCactt GCUACUUC m7a Disrupted HHFCT_59042_cluster-8603_10_16
hsa-miR-5089-3p tatcaAGTAGCActt AUGCUACU m7b Disrupted HHFCT_59042_cluster-8603_10_16
hsa-miR-512-3p tatcaagCAGCACTt AAGUGCUG m7b Created HHFCT_59042_cluster-8603_10_16
hsa-miR-1273e taTCAAGCAgcactt UUGCUUGA m7b (m6b->m7b) HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-138-1-3p tatcAAGTAGCactt GCUACUUC m7a Disrupted HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-5089-3p tatcaAGTAGCActt AUGCUACU m7b Disrupted HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-512-3p tatcaagCAGCACTt AAGUGCUG m7b Created HHKTA_34063_NM_025134|6269|6308|2.16339705258786|0.127600863062919
hsa-miR-1273e taTCAAGCAgcactt UUGCUUGA m7b (m6b->m7b) HPCB1_15534_G19520.1_53337960
hsa-miR-138-1-3p tatcAAGTAGCactt GCUACUUC m7a Disrupted HPCB1_15534_G19520.1_53337960
hsa-miR-5089-3p tatcaAGTAGCActt AUGCUACU m7b Disrupted HPCB1_15534_G19520.1_53337960
hsa-miR-512-3p tatcaagCAGCACTt AAGUGCUG m7b Created HPCB1_15534_G19520.1_53337960
hsa-miR-1273e taTCAAGCAgcactt UUGCUUGA m7b (m6b->m7b) HPHES_3225_G4222.1_53337980
hsa-miR-138-1-3p tatcAAGTAGCactt GCUACUUC m7a Disrupted HPHES_3225_G4222.1_53337980
hsa-miR-5089-3p tatcaAGTAGCActt AUGCUACU m7b Disrupted HPHES_3225_G4222.1_53337980
hsa-miR-512-3p tatcaagCAGCACTt AAGUGCUG m7b Created HPHES_3225_G4222.1_53337980

Mutation Mutation ID Sample Name Cancer Type
chr16:g.53304025G>A COSM191145 TCGA-AA-A01P-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6807-5p taagaTGGCTCAttc GUGAGCCA m7b Disrupted HHKTA_8433_NM_025134|6229|6268|7.70169350721277|0.127600863062919
hsa-miR-937-5p taagaTGACTCAttc GUGAGUCA m7b Created HHKTA_8433_NM_025134|6229|6268|7.70169350721277|0.127600863062919

Mutation Mutation ID Sample Name Cancer Type
chr16:g.53296992T>C COSM971430 TCGA-B5-A11E-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-652-5p aTAGGGTTGtatcta CAACCCUA m8a (m8a->m7a) HPCB1_15533_G19519.1_53330902
hsa-miR-652-5p aTAGGGTTGtatcta CAACCCUA m8a (m8a->m7a) HPSLC_7545_G8920.1_53330902

Mutation Mutation ID Sample Name Cancer Type
chr16:g.53292874C>T COSM243681 PR-2740 [prostate][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3920 gcctactTAATCAGc ACUGAUUA m7b Created HPKTA_23378_G25170.1_53326788
hsa-miR-4461 gcctaCTCAATCagc GAUUGAGA m7a Disrupted HPKTA_23378_G25170.1_53326788
hsa-miR-562 gcCTACTTaatcagc AAAGUAGC m6b Created HPKTA_23378_G25170.1_53326788
hsa-miR-6869-5p gcCTACTCAatcagc GUGAGUAG m7b (m7b->m6b) HPKTA_23378_G25170.1_53326788
hsa-miR-3920 gcctactTAATCAGc ACUGAUUA m7b Created HPRO6_29576_G34955.1_53326789
hsa-miR-4461 gcctaCTCAATCagc GAUUGAGA m7a Disrupted HPRO6_29576_G34955.1_53326789
hsa-miR-562 gcCTACTTaatcagc AAAGUAGC m6b Created HPRO6_29576_G34955.1_53326789
hsa-miR-6869-5p gcCTACTCAatcagc GUGAGUAG m7b (m7b->m6b) HPRO6_29576_G34955.1_53326789

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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