SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0044365
Gene Symbol: CALCOCO2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.48860376G>A COSM1384030 TCGA-AA-3697-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-190a-5p ctttgcCATATCAag UGAUAUGU m7a Created HPCB1_16979_G21378.1_46937733
hsa-miR-190b ctttgcCATATCAag UGAUAUGU m7a Created HPCB1_16979_G21378.1_46937733
hsa-miR-4445-3p ctTTGCCGTatcaag CACGGCAA m7b (m7b->m6b) HPCB1_16979_G21378.1_46937733
hsa-miR-548al ctTTGCCGTatcaag AACGGCAA m7b (m7b->m6b) HPCB1_16979_G21378.1_46937733
hsa-miR-190a-5p ctttgcCATATCAag UGAUAUGU m7a Created HPRO6_32613_G38658.1_46937734
hsa-miR-190b ctttgcCATATCAag UGAUAUGU m7a Created HPRO6_32613_G38658.1_46937734
hsa-miR-4445-3p ctTTGCCGTatcaag CACGGCAA m7b (m7b->m6b) HPRO6_32613_G38658.1_46937734
hsa-miR-548al ctTTGCCGTatcaag AACGGCAA m7b (m7b->m6b) HPRO6_32613_G38658.1_46937734
hsa-miR-190a-5p ctttgcCATATCAag UGAUAUGU m7a Created HPTA3_7956_G12536.1_46937735
hsa-miR-190b ctttgcCATATCAag UGAUAUGU m7a Created HPTA3_7956_G12536.1_46937735
hsa-miR-4445-3p ctTTGCCGTatcaag CACGGCAA m7b (m7b->m6b) HPTA3_7956_G12536.1_46937735
hsa-miR-548al ctTTGCCGTatcaag AACGGCAA m7b (m7b->m6b) HPTA3_7956_G12536.1_46937735

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48860375C>T COSM77413 TCGA-G4-6315-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3120-3p tctTTGCTGTatcaa CACAGCAA m7b Created HPCB1_16979_G21378.1_46937733
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPCB1_16979_G21378.1_46937733
hsa-miR-545-3p tcTTTGCTGtatcaa UCAGCAAA m7b (m6b->m7b) HPCB1_16979_G21378.1_46937733
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPCB1_16979_G21378.1_46937733
hsa-miR-3120-3p tctTTGCTGTatcaa CACAGCAA m7b Created HPRO6_32613_G38658.1_46937734
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPRO6_32613_G38658.1_46937734
hsa-miR-545-3p tcTTTGCTGtatcaa UCAGCAAA m7b (m6b->m7b) HPRO6_32613_G38658.1_46937734
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPRO6_32613_G38658.1_46937734
hsa-miR-3120-3p tctTTGCTGTatcaa CACAGCAA m7b Created HPTA3_7956_G12536.1_46937735
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPTA3_7956_G12536.1_46937735
hsa-miR-545-3p tcTTTGCTGtatcaa UCAGCAAA m7b (m6b->m7b) HPTA3_7956_G12536.1_46937735
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPTA3_7956_G12536.1_46937735

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48860375C>A COSM1384029 TCGA-AA-3713-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4418 tcttTGCAGTatcaa CACUGCAG m6b Created HPCB1_16979_G21378.1_46937733
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPCB1_16979_G21378.1_46937733
hsa-miR-518a-5p tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPCB1_16979_G21378.1_46937733
hsa-miR-527 tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPCB1_16979_G21378.1_46937733
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPCB1_16979_G21378.1_46937733
hsa-miR-6807-3p tcttTGCAGTatcaa CACUGCAU m6b Created HPCB1_16979_G21378.1_46937733
hsa-miR-4418 tcttTGCAGTatcaa CACUGCAG m6b Created HPRO6_32613_G38658.1_46937734
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPRO6_32613_G38658.1_46937734
hsa-miR-518a-5p tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPRO6_32613_G38658.1_46937734
hsa-miR-527 tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPRO6_32613_G38658.1_46937734
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPRO6_32613_G38658.1_46937734
hsa-miR-6807-3p tcttTGCAGTatcaa CACUGCAU m6b Created HPRO6_32613_G38658.1_46937734
hsa-miR-4418 tcttTGCAGTatcaa CACUGCAG m6b Created HPTA3_7956_G12536.1_46937735
hsa-miR-4445-3p tctTTGCCGTatcaa CACGGCAA m7b Disrupted HPTA3_7956_G12536.1_46937735
hsa-miR-518a-5p tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPTA3_7956_G12536.1_46937735
hsa-miR-527 tCTTTGCAGtatcaa CUGCAAAG m8a (m7a->m8a) HPTA3_7956_G12536.1_46937735
hsa-miR-548al tctTTGCCGTatcaa AACGGCAA m7b Disrupted HPTA3_7956_G12536.1_46937735
hsa-miR-6807-3p tcttTGCAGTatcaa CACUGCAU m6b Created HPTA3_7956_G12536.1_46937735

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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