SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001261393
Gene Symbol: CALCOCO2
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.48863159T>A COSN1720837 RK082_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1237-3p actgatCAGAAGGtc UCCUUCUG m7b Created HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-1288-5p acTGATCTGaaggtc GCAGAUCA m7b (m7b->m6b) HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-3151-3p actGATCAGaaggtc CCUGAUCC m6b Created HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-3192-3p actGATCAGAaggtc CUCUGAUC m7b Created HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-3942-3p actgATCTGAAggtc UUUCAGAU m7b Disrupted HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-4762-3p actgATCAGAAGgtc CUUCUGAU m8a Created HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-5100 actGATCTGAAggtc UUCAGAUC m8a Disrupted HHRBL_6462_BCBL1-2of3-SCL_7253
hsa-miR-5694 acTGATCTGaaggtc CAGAUCAU m7a (m7a->m6a) HHRBL_6462_BCBL1-2of3-SCL_7253

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48863086T>C COSN507377
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1182 gtcaAGACCCTgcct GAGGGUCU m7b Created HHKTA_24972_NM_005831|1473|1512|2.98548793257124|1.04765706994951
hsa-miR-1207-5p gtcaagaCCCTGCCt UGGCAGGG m7b Created HHKTA_24972_NM_005831|1473|1512|2.98548793257124|1.04765706994951
hsa-miR-193a-5p gtcAAGACCCtgcct UGGGUCUU m7b Created HHKTA_24972_NM_005831|1473|1512|2.98548793257124|1.04765706994951
hsa-miR-4763-3p gtcaagaCCCTGCCt AGGCAGGG m7b Created HHKTA_24972_NM_005831|1473|1512|2.98548793257124|1.04765706994951
hsa-miR-1182 gtcaAGACCCTgcct GAGGGUCU m7b Created HPKMA_6265_G7277.1_46940447
hsa-miR-1207-5p gtcaagaCCCTGCCt UGGCAGGG m7b Created HPKMA_6265_G7277.1_46940447
hsa-miR-193a-5p gtcAAGACCCtgcct UGGGUCUU m7b Created HPKMA_6265_G7277.1_46940447
hsa-miR-4763-3p gtcaagaCCCTGCCt AGGCAGGG m7b Created HPKMA_6265_G7277.1_46940447

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48841831T>C COSM4151656 C0063T [kidney][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1272 atgTCATCATacctt GAUGAUGA m7b Created HPCB1_16977_G21376.1_46919216
hsa-miR-1322 atgtCATCATacctt GAUGAUGC m6b Created HPCB1_16977_G21376.1_46919216
hsa-miR-425-5p aTGTCATTatacctt AAUGACAC m7a Disrupted HPCB1_16977_G21376.1_46919216
hsa-miR-1272 atgTCATCATacctt GAUGAUGA m7b Created HPRO6_32611_G38655.2_46919204
hsa-miR-1322 atgtCATCATacctt GAUGAUGC m6b Created HPRO6_32611_G38655.2_46919204
hsa-miR-425-5p aTGTCATTatacctt AAUGACAC m7a Disrupted HPRO6_32611_G38655.2_46919204
hsa-miR-1272 atgTCATCATacctt GAUGAUGA m7b Created HPRT3_10868_G14398.1_46919188
hsa-miR-1322 atgtCATCATacctt GAUGAUGC m6b Created HPRT3_10868_G14398.1_46919188
hsa-miR-425-5p aTGTCATTatacctt AAUGACAC m7a Disrupted HPRT3_10868_G14398.1_46919188
hsa-miR-1272 atgTCATCATacctt GAUGAUGA m7b Created HPSEF_9594_G11533.1_46919193
hsa-miR-1322 atgtCATCATacctt GAUGAUGC m6b Created HPSEF_9594_G11533.1_46919193
hsa-miR-425-5p aTGTCATTatacctt AAUGACAC m7a Disrupted HPSEF_9594_G11533.1_46919193

Mutation Mutation ID Sample Name Cancer Type
chr17:g.48841802A>G COSM166976 TCGA-AG-A01Y-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-298 aagTTCTGCatccct AGCAGAAG m6b Created HPRO6_32610_G38655.1_46919167
hsa-miR-3668 aagtTCTACATccct AAUGUAGA m7b Disrupted HPRO6_32610_G38655.1_46919167

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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