SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: hsa_circ_0043946
Gene Symbol: BRCA1
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr17:g.43045696C>A COSM309513 S00936 [lung][NS][carcinoma][small_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1275 cccagaTCCCCCACa GUGGGGGA m8a Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-4447 cccagatCCCCCACa GGUGGGGG m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-4472 cccagatCCCCCACa GGUGGGGG m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-4525 cccagATCCCCCaca GGGGGGAU m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-4665-5p cccagaTCCCCCAca CUGGGGGA m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-5010-5p cccagATCCCCCaca AGGGGGAU m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-503-3p cccagATACCCCaca GGGGUAUU m7a Created HHFKP_59876_cluster-10350_3_339
hsa-miR-625-5p cccagaTCCCCCaca AGGGGGAA m6b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-6742-5p cccagatACCCCACa AGUGGGGU m7b Created HHFKP_59876_cluster-10350_3_339

Mutation Mutation ID Sample Name Cancer Type
chr17:g.43045696AGATC>C COSM4167795 TLE36 [haematopoietic_and_lymphoid_tissue][NS][lymphoid_neoplasm][acute_lymphoblastic_T_cell_leukaemia]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1298-3p atacCCCAGATcccccaca CAUCUGGG m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-3170 atACCCCAGatcccccaca CUGGGGUU m7a (m7a->m6a) HHFKP_59876_cluster-10350_3_339
hsa-miR-4447 ataccccCCCCCACa GGUGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-4472 ataccccCCCCCACa GGUGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-4667-5p ataCCCCAGatcccccaca ACUGGGGA m6b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-6752-5p atACCCCCCcccaca GGGGGGUG m7a (m6a->m7a) HHFKP_59876_cluster-10350_3_339
hsa-miR-6885-5p atacccCCCCCCaca AGGGGGGC m6b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-7109-5p atacccCCCCCCAca CUGGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-7155-5p atACCCCAGAtcccccaca UCUGGGGU m8a Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-8089 ataCCCCAGatcccccaca CCUGGGGA m6b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-1298-3p atacCCCAGATcccccaca CAUCUGGG m7b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-3170 atACCCCAGatcccccaca CUGGGGUU m7a (m7a->m6a) HHFKP_59876_cluster-10350_3_339
hsa-miR-4447 ataccccCCCCCACa GGUGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-4472 ataccccCCCCCACa GGUGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-4667-5p ataCCCCAGatcccccaca ACUGGGGA m6b Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-6752-5p atACCCCCCcccaca GGGGGGUG m7a (m6a->m7a) HHFKP_59876_cluster-10350_3_339
hsa-miR-6885-5p atacccCCCCCCaca AGGGGGGC m6b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-7109-5p atacccCCCCCCAca CUGGGGGG m7b Created HHFKP_59876_cluster-10350_3_339
hsa-miR-7155-5p atACCCCAGAtcccccaca UCUGGGGU m8a Disrupted HHFKP_59876_cluster-10350_3_339
hsa-miR-8089 ataCCCCAGatcccccaca CCUGGGGA m6b Disrupted HHFKP_59876_cluster-10350_3_339

Mutation Mutation ID Sample Name Cancer Type
chr17:g.43044803G>C COSN7435585 8030032 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1250-3p aaaaaagGAAAATGa ACAUUUUC m7b Disrupted HHHNA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969
hsa-miR-3140-3p aaAAAAGCaaaatga AGCUUUUG m6b Created HHHNA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969
hsa-miR-6885-3p aaaaAAGCAAAatga CUUUGCUU m7b Created HHHNA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969
hsa-miR-1250-3p aaaaaagGAAAATGa ACAUUUUC m7b Disrupted HHHSA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969
hsa-miR-3140-3p aaAAAAGCaaaatga AGCUUUUG m6b Created HHHSA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969
hsa-miR-6885-3p aaaaAAGCAAAatga CUUUGCUU m7b Created HHHSA_9731_BRCA1|NM_007294|exon_utr3|-7.3515101614793|0.4681501774969

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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