SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_001188
Gene Symbol: BAK1
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr6:g.33574399G>A COSN7870978 8066067 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-5p tgcCCCTGAGctttc CCUCAGGG m7b Disrupted HHFCT_133017_cluster-19822_3_8
hsa-miR-3934-3p tgccCCTGAGCtttc UGCUCAGG m7b Disrupted HHFCT_133017_cluster-19822_3_8
hsa-miR-4278 tgCCCCTAagctttc CUAGGGGG m6b Created HHFCT_133017_cluster-19822_3_8
hsa-miR-4518 tgcCCCTGAGCtttc GCUCAGGG m8a Disrupted HHFCT_133017_cluster-19822_3_8
hsa-miR-4688 TGCCCCTAagctttc UAGGGGCA m8a Created HHFCT_133017_cluster-19822_3_8
hsa-miR-6824-5p tgCCCCTAagctttc GUAGGGGA m6b Created HHFCT_133017_cluster-19822_3_8
hsa-miR-6854-5p tgcccCTGAGCTTtc AAGCUCAG m8a Disrupted HHFCT_133017_cluster-19822_3_8

Mutation Mutation ID Sample Name Cancer Type
chr6:g.33574398A>G COSN7870977 8066067 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1266-5p gcCCCTGAGctttct CCUCAGGG m7b (m7b->m6b) HHFCT_133017_cluster-19822_3_8
hsa-miR-1915-3p gcCCCTGGGctttct CCCCAGGG m7b (m6b->m7b) HHFCT_133017_cluster-19822_3_8
hsa-miR-3934-3p gccCCTGAGCtttct UGCUCAGG m7b Disrupted HHFCT_133017_cluster-19822_3_8
hsa-miR-4518 gcCCCTGAGCtttct GCUCAGGG m8a Disrupted HHFCT_133017_cluster-19822_3_8
hsa-miR-6764-5p gcCCCTGGGctttct UCCCAGGG m7b (m6b->m7b) HHFCT_133017_cluster-19822_3_8
hsa-miR-6854-5p gcccCTGAGCTTtct AAGCUCAG m8a Disrupted HHFCT_133017_cluster-19822_3_8

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser