SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NM_001184
Gene Symbol: ATR
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Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449511G>A COSM48248 TCGA-G4-6315-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-2116-5p attgAAGAACatgtg GGUUCUUA m6b Created HHFKP_99207_cluster-16797_3_39
hsa-miR-22-5p attGAAGAACatgtg AGUUCUUC m7b Created HHFKP_99207_cluster-16797_3_39
hsa-miR-4677-5p attgAAGAACAtgtg UUGUUCUU m7b Created HHFKP_99207_cluster-16797_3_39
hsa-miR-676-5p aTTGAAGAacatgtg UCUUCAAC m7a Created HHFKP_99207_cluster-16797_3_39

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449510A>G COSM1419621 TCGA-AD-6889-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6886-3p ttGAAGGGCAtgtgc UGCCCUUC m8a Created HHFKP_99207_cluster-16797_3_39

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449460A>C COSM3427166 TCGA-EI-6883-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3126-3p ctatGCCAGATGtat CAUCUGGC m8a Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-3945 cTATGCCCgatgtat AGGGCAUA m7b Created HHFCT_106791_cluster-16797_2_38
hsa-miR-4720-5p ctATGCCAGatgtat CCUGGCAU m7b (m7b->m6b) HHFCT_106791_cluster-16797_2_38
hsa-miR-4799-3p ctATGCCAGatgtat ACUGGCAU m7b (m7b->m6b) HHFCT_106791_cluster-16797_2_38
hsa-miR-5588-5p ctATGCCAGatgtat ACUGGCAU m7b (m7b->m6b) HHFCT_106791_cluster-16797_2_38
hsa-miR-6862-5p ctATGCCCGatgtat CGGGCAUG m7a (m6a->m7a) HHFCT_106791_cluster-16797_2_38
hsa-miR-6868-5p ctaTGCCAGatgtat ACUGGCAG m6b Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-7112-5p ctaTGCCCGatgtat ACGGGCAG m6b Created HHFCT_106791_cluster-16797_2_38
hsa-miR-3126-3p ctatGCCAGATGtat CAUCUGGC m8a Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-3945 cTATGCCCgatgtat AGGGCAUA m7b Created HHFKP_99206_cluster-16797_2_93
hsa-miR-4720-5p ctATGCCAGatgtat CCUGGCAU m7b (m7b->m6b) HHFKP_99206_cluster-16797_2_93
hsa-miR-4799-3p ctATGCCAGatgtat ACUGGCAU m7b (m7b->m6b) HHFKP_99206_cluster-16797_2_93
hsa-miR-5588-5p ctATGCCAGatgtat ACUGGCAU m7b (m7b->m6b) HHFKP_99206_cluster-16797_2_93
hsa-miR-6862-5p ctATGCCCGatgtat CGGGCAUG m7a (m6a->m7a) HHFKP_99206_cluster-16797_2_93
hsa-miR-6868-5p ctaTGCCAGatgtat ACUGGCAG m6b Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-7112-5p ctaTGCCCGatgtat ACGGGCAG m6b Created HHFKP_99206_cluster-16797_2_93

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449459G>C COSM1308679 TCGA-G2-A2EO-01 [urinary_tract][bladder][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3126-3p tatGCCAGATGtatc CAUCUGGC m8a Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-3688-5p taTGCCACatgtatc AGUGGCAA m6b Created HHFCT_106791_cluster-16797_2_38
hsa-miR-4666a-5p tatgccACATGTATc AUACAUGU m8a Created HHFCT_106791_cluster-16797_2_38
hsa-miR-4720-5p tATGCCAGatgtatc CCUGGCAU m7b Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-4799-3p tATGCCAGatgtatc ACUGGCAU m7b Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-5588-5p tATGCCAGatgtatc ACUGGCAU m7b Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-6868-5p taTGCCAGatgtatc ACUGGCAG m6b Disrupted HHFCT_106791_cluster-16797_2_38
hsa-miR-3126-3p tatGCCAGATGtatc CAUCUGGC m8a Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-3688-5p taTGCCACatgtatc AGUGGCAA m6b Created HHFKP_99206_cluster-16797_2_93
hsa-miR-4666a-5p tatgccACATGTATc AUACAUGU m8a Created HHFKP_99206_cluster-16797_2_93
hsa-miR-4720-5p tATGCCAGatgtatc CCUGGCAU m7b Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-4799-3p tATGCCAGatgtatc ACUGGCAU m7b Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-5588-5p tATGCCAGatgtatc ACUGGCAU m7b Disrupted HHFKP_99206_cluster-16797_2_93
hsa-miR-6868-5p taTGCCAGatgtatc ACUGGCAG m6b Disrupted HHFKP_99206_cluster-16797_2_93

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449454A>G COSM3125086 454 [urinary_tract][bladder][carcinoma][transitional_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-642a-3p cagATGTGTCTtggt AGACACAU m8a Created HHFCT_106791_cluster-16797_2_38
hsa-miR-642b-3p cagATGTGTCTtggt AGACACAU m8a Created HHFCT_106791_cluster-16797_2_38
hsa-miR-642a-3p cagATGTGTCTtggt AGACACAU m8a Created HHFKP_99206_cluster-16797_2_93
hsa-miR-642b-3p cagATGTGTCTtggt AGACACAU m8a Created HHFKP_99206_cluster-16797_2_93

Mutation Mutation ID Sample Name Cancer Type
chr3:g.142449451T>G COSM4996292 NPC37F [upper_aerodigestive_tract][pharynx][carcinoma][nasopharyngeal_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID

No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.
*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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