SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0024206
Gene Symbol: ATM
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Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr11:g.108244954G>T COSM1676418 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-617 tttaaaaGAAGTCat AGACUUCC m6b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-6505-3p tttaaaAGAAGTCAt UGACUUCU m8a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-617 tttaaaaGAAGTCat AGACUUCC m6b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-6505-3p tttaaaAGAAGTCAt UGACUUCU m8a Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-617 tttaaaaGAAGTCat AGACUUCC m6b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-6505-3p tttaaaAGAAGTCAt UGACUUCU m8a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-617 tttaaaaGAAGTCat AGACUUCC m6b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-6505-3p tttaaaAGAAGTCAt UGACUUCU m8a Disrupted HPCB3_3820_G5280.1_108115663

Mutation Mutation ID Sample Name Cancer Type
chr11:g.108244953AGA>A COSM3733254 408 [haematopoietic_and_lymphoid_tissue][lymph_node][lymphoid_neoplasm][mantle_cell_lymphoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6505-3p ctttaaaAGAAGTCAtt UGACUUCU m8a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-6505-3p ctttaaaAGAAGTCAtt UGACUUCU m8a Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-6505-3p ctttaaaAGAAGTCAtt UGACUUCU m8a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-6505-3p ctttaaaAGAAGTCAtt UGACUUCU m8a Disrupted HPCB3_3820_G5280.1_108115663

Mutation Mutation ID Sample Name Cancer Type
chr11:g.108244946C>A COSM4664087 T578 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-186-5p aatgATTCTTTaaaa CAAAGAAU m7b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-3133 aatgaTTCTTTAaaa UAAAGAAC m7a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-5692a aatgATTATTTaaaa CAAAUAAU m7b Created HPCB1_7170_G9017.1_108115667
hsa-miR-15b-3p aATGATTCtttaaaa CGAAUCAU m7b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-186-5p aatgATTCTTTaaaa CAAAGAAU m7b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-3133 aatgaTTCTTTAaaa UAAAGAAC m7a Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-5692a aatgATTATTTaaaa CAAAUAAU m7b Created HPCB3_3820_G5280.1_108115663
hsa-miR-15b-3p aATGATTCtttaaaa CGAAUCAU m7b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-186-5p aatgATTCTTTaaaa CAAAGAAU m7b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-3133 aatgaTTCTTTAaaa UAAAGAAC m7a Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-5692a aatgATTATTTaaaa CAAAUAAU m7b Created HPCB1_7170_G9017.1_108115667
hsa-miR-15b-3p aATGATTCtttaaaa CGAAUCAU m7b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-186-5p aatgATTCTTTaaaa CAAAGAAU m7b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-3133 aatgaTTCTTTAaaa UAAAGAAC m7a Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-5692a aatgATTATTTaaaa CAAAUAAU m7b Created HPCB3_3820_G5280.1_108115663

Mutation Mutation ID Sample Name Cancer Type
chr11:g.108244935G>A COSM922701 TCGA-B5-A11H-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1264 aacatAGACTTaatg CAAGUCUU m6b Created HPCB1_7170_G9017.1_108115667
hsa-miR-3184-3p aacatAGACTTaatg AAAGUCUC m6b Created HPCB1_7170_G9017.1_108115667
hsa-miR-7109-3p aacatAGGCTTaatg CAAGCCUC m6b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-1264 aacatAGACTTaatg CAAGUCUU m6b Created HPCB3_3820_G5280.1_108115663
hsa-miR-3184-3p aacatAGACTTaatg AAAGUCUC m6b Created HPCB3_3820_G5280.1_108115663
hsa-miR-7109-3p aacatAGGCTTaatg CAAGCCUC m6b Disrupted HPCB3_3820_G5280.1_108115663
hsa-miR-1264 aacatAGACTTaatg CAAGUCUU m6b Created HPCB1_7170_G9017.1_108115667
hsa-miR-3184-3p aacatAGACTTaatg AAAGUCUC m6b Created HPCB1_7170_G9017.1_108115667
hsa-miR-7109-3p aacatAGGCTTaatg CAAGCCUC m6b Disrupted HPCB1_7170_G9017.1_108115667
hsa-miR-1264 aacatAGACTTaatg CAAGUCUU m6b Created HPCB3_3820_G5280.1_108115663
hsa-miR-3184-3p aacatAGACTTaatg AAAGUCUC m6b Created HPCB3_3820_G5280.1_108115663
hsa-miR-7109-3p aacatAGGCTTaatg CAAGCCUC m6b Disrupted HPCB3_3820_G5280.1_108115663

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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