SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0078397
Gene Symbol: ARID1B
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr6:g.156829411C>T COSM3674595 TCGA-HI-7168-01 [prostate][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4663 cagtaccCTCAGCag AGCUGAGC m6b Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-6841-5p caGTACCCTcagcag UAGGGUAC m7b (m7b->m6b) HPSD3_8775_G11799.1_157150534
hsa-miR-7160-5p cagtacCCTCAGCAg UGCUGAGG m8a Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-8077 cagtaccCTCAGCag GGCUGAGU m6b Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-4663 cagtaccCTCAGCag AGCUGAGC m6b Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-6841-5p caGTACCCTcagcag UAGGGUAC m7b (m7b->m6b) HPSD3_8775_G11799.1_157150534
hsa-miR-7160-5p cagtacCCTCAGCAg UGCUGAGG m8a Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-8077 cagtaccCTCAGCag GGCUGAGU m6b Disrupted HPSD3_8775_G11799.1_157150534

Mutation Mutation ID Sample Name Cancer Type
chr6:g.156829409C>T COSM3022242 Gp5D [large_intestine][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1185-5p tgcagTATCCTCagc AGAGGAUA m7b Created HPSD3_8775_G11799.1_157150534
hsa-miR-3679-5p tgcagTATCCTCAgc UGAGGAUA m8a Created HPSD3_8775_G11799.1_157150534
hsa-miR-6841-5p tgcaGTACCCTcagc UAGGGUAC m7b Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-1185-5p tgcagTATCCTCagc AGAGGAUA m7b Created HPSD3_8775_G11799.1_157150534
hsa-miR-3679-5p tgcagTATCCTCAgc UGAGGAUA m8a Created HPSD3_8775_G11799.1_157150534
hsa-miR-6841-5p tgcaGTACCCTcagc UAGGGUAC m7b Disrupted HPSD3_8775_G11799.1_157150534

Mutation Mutation ID Sample Name Cancer Type
chr6:g.156829404C>T COSM207131 TCGA-AA-3710-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-181a-5p cgGAATGTagtaccc AACAUUCA m6b Created HPSD3_8775_G11799.1_157150534
hsa-miR-181b-5p cgGAATGTagtaccc AACAUUCA m6b Created HPSD3_8775_G11799.1_157150534
hsa-miR-181c-5p cgGAATGTagtaccc AACAUUCA m6b Created HPSD3_8775_G11799.1_157150534
hsa-miR-181d-5p cgGAATGTagtaccc AACAUUCA m6b Created HPSD3_8775_G11799.1_157150534
hsa-miR-20a-3p cggAATGCAGTaccc ACUGCAUU m8a Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-217 cggaATGCAGTAccc UACUGCAU m8a Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-4262 cgGAATGTagtaccc GACAUUCA m6b Created HPSD3_8775_G11799.1_157150534
hsa-miR-4418 cggaaTGCAGTaccc CACUGCAG m6b Disrupted HPSD3_8775_G11799.1_157150534
hsa-miR-6807-3p cggaATGCAGTaccc CACUGCAU m7b Disrupted HPSD3_8775_G11799.1_157150534

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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