SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: NM_181847
Gene Symbol: AMIGO2
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078366A>C COSM939649 TCGA-BS-A0UF-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-297 ccACATACATttagt AUGUAUGU m8a Created HPRO6_20496_G23896.1_47472133
hsa-miR-3606-3p ccacatAAATTTagt AAAAUUUC m6b Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-567 ccACATACatttagt AGUAUGUU m6b Created HPRO6_20496_G23896.1_47472133
hsa-miR-297 ccACATACATttagt AUGUAUGU m8a Created HPTK1_8012_G9442.1_47472134
hsa-miR-3606-3p ccacatAAATTTagt AAAAUUUC m6b Disrupted HPTK1_8012_G9442.1_47472134
hsa-miR-567 ccACATACatttagt AGUAUGUU m6b Created HPTK1_8012_G9442.1_47472134

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078357C>T COSM3368826 TCGA-DJ-A2PN-01 [thyroid][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1200 tttagtgTCAGGAaa CUCCUGAG m6b Created HPRO6_20496_G23896.1_47472133
hsa-miR-1343-3p tttagtgCCAGGAaa CUCCUGGG m6b Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-221-5p tttagTGCCAGGaaa ACCUGGCA m7b Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-3117-5p ttTAGTGTCaggaaa AGACACUA m7b (m6b->m7b) HPRO6_20496_G23896.1_47472133
hsa-miR-378a-5p tttagtGTCAGGAaa CUCCUGAC m7b Created HPRO6_20496_G23896.1_47472133
hsa-miR-4704-5p ttTAGTGTCaggaaa GACACUAG m7a (m6a->m7a) HPRO6_20496_G23896.1_47472133
hsa-miR-4720-5p tttagTGCCAGGaaa CCUGGCAU m7a Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-6730-3p tttaGTGTCAGGaaa CCUGACAC m8a Created HPRO6_20496_G23896.1_47472133
hsa-miR-6783-3p tttagtgCCAGGAAa UUCCUGGG m7a Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-8073 tttagTGCCAGGaaa ACCUGGCA m7b Disrupted HPRO6_20496_G23896.1_47472133
hsa-miR-1200 tttagtgTCAGGAaa CUCCUGAG m6b Created HPTK1_8012_G9442.1_47472134
hsa-miR-1343-3p tttagtgCCAGGAaa CUCCUGGG m6b Disrupted HPTK1_8012_G9442.1_47472134
hsa-miR-221-5p tttagTGCCAGGaaa ACCUGGCA m7b Disrupted HPTK1_8012_G9442.1_47472134
hsa-miR-3117-5p ttTAGTGTCaggaaa AGACACUA m7b (m6b->m7b) HPTK1_8012_G9442.1_47472134
hsa-miR-378a-5p tttagtGTCAGGAaa CUCCUGAC m7b Created HPTK1_8012_G9442.1_47472134
hsa-miR-4704-5p ttTAGTGTCaggaaa GACACUAG m7a (m6a->m7a) HPTK1_8012_G9442.1_47472134
hsa-miR-4720-5p tttagTGCCAGGaaa CCUGGCAU m7a Disrupted HPTK1_8012_G9442.1_47472134
hsa-miR-6730-3p tttaGTGTCAGGaaa CCUGACAC m8a Created HPTK1_8012_G9442.1_47472134
hsa-miR-6783-3p tttagtgCCAGGAAa UUCCUGGG m7a Disrupted HPTK1_8012_G9442.1_47472134
hsa-miR-8073 tttagTGCCAGGaaa ACCUGGCA m7b Disrupted HPTK1_8012_G9442.1_47472134
Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078269G>A COSM939648 LIM2551 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078134C>A COSM1676899 U251 [central_nervous_system][brain][glioma][astrocytoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3914 aatGGTTCCTTtcgt AAGGAACC m8a Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-548a-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ab aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ad-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ae-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ak aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548am-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ap-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548aq-5p aatggTTACTTTCgt GAAAGUAA m8a Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ar-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548as-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548au-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548ay-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548b-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548bb-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548c-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548d-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548h-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548i aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548j-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548o-5p aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548w aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-548y aatggTTACTTTcgt AAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-559 aatggTTACTTTcgt UAAAGUAA m7b Created HHFKP_31448_cluster-5476_1_283
Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078129C>T COSM1676898 HCC2998 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078128G>A COSM3729555 169 [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078106G>A COSM3461112 TCGA-EE-A2MS-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p ttcatgaGGCTCAGg CCUGAGCC m7b Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-2114-3p ttcatGAGGCTCagg CGAGCCUC m7b Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-27b-5p ttcatgAAGCTCagg AGAGCUUA m6b Created HHFKP_31448_cluster-5476_1_283
hsa-miR-6751-3p ttcatgaGGCTCAGg ACUGAGCC m7b Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-6823-3p ttcatGAGGCTCAgg UGAGCCUC m8a Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-7154-5p TTCATGAAgctcagg UUCAUGAA m8a Created HHFKP_31448_cluster-5476_1_283

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47078104C>T COSM1361756 TCGA-CA-6718-01 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1199-5p catgaGGCTCAGGtc CCUGAGCC m8a Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-2114-3p catGAGGCTCaggtc CGAGCCUC m7b Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-6751-3p catgaGGCTCAGgtc ACUGAGCC m7b Disrupted HHFKP_31448_cluster-5476_1_283
hsa-miR-6823-3p catGAGGCTCAggtc UGAGCCUC m8a Disrupted HHFKP_31448_cluster-5476_1_283

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47077942G>T COSM109891 35T [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3613-3p agccctcTTTTTGag ACAAAAAA m6b Created HHFCT_32767_cluster-5476_11_52
hsa-miR-424-3p agccctCGTTTTGag CAAAACGU m7a Disrupted HHFCT_32767_cluster-5476_11_52
hsa-miR-548ad-3p agcccTCGTTTTgag GAAAACGA m7b Disrupted HHFCT_32767_cluster-5476_11_52
hsa-miR-548o-3p agccctcGTTTTGag CCAAAACU m6b Disrupted HHFCT_32767_cluster-5476_11_52
hsa-miR-583 agcCCTCTTTttgag CAAAGAGG m7b Created HHFCT_32767_cluster-5476_11_52
Mutation Mutation ID Sample Name Cancer Type
chr12:g.47077923G>A COSM939647 TCGA-AP-A051-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr12:g.47077922T>C COSM4661386 T3262 [large_intestine][caecum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-6507-5p tggagtgTATTCTTg GAAGAAUA m7b Disrupted HHFCT_32767_cluster-5476_11_52
hsa-miR-7703 tgGAGTGCAttcttg UUGCACUC m7b (m6b->m7b) HHFCT_32767_cluster-5476_11_52

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47077910G>A COSM939646 TCGA-AP-A059-01 [endometrium][NS][carcinoma][endometrioid_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-3689a-5p ttgTATCACAatgaa UGUGAUAU m7a Created HHFCT_32766_cluster-5476_10_34
hsa-miR-3689b-5p ttgTATCACAatgaa UGUGAUAU m7a Created HHFCT_32766_cluster-5476_10_34
hsa-miR-3689e ttgTATCACAatgaa UGUGAUAU m7a Created HHFCT_32766_cluster-5476_10_34
hsa-miR-3689f ttgTATCACAatgaa UGUGAUAU m7a Created HHFCT_32766_cluster-5476_10_34
hsa-miR-4289 ttgtatCACAATGaa GCAUUGUG m7b Created HHFCT_32766_cluster-5476_10_34
hsa-miR-4317 ttgtatcGCAATGaa ACAUUGCC m6b Disrupted HHFCT_32766_cluster-5476_10_34
hsa-miR-8070 ttgtATCACAatgaa AUGUGAUU m6b Created HHFCT_32766_cluster-5476_10_34

Mutation Mutation ID Sample Name Cancer Type
chr12:g.47077773C>T COSM2068361 TCGA-EI-6917-01 [large_intestine][rectum][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-429 cCAGTATTgttttgg UAAUACUG m7b Created HHFCT_32765_cluster-5476_8_45
hsa-miR-548ad-3p ccagtaTCGTTTTgg GAAAACGA m7b Disrupted HHFCT_32765_cluster-5476_8_45

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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