SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
  Home Search Help Download  

PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

Transcript ID: hsa_circ_0025919
Gene Symbol: ADAMTS20
Browse Associations

Somatic mutations that impact miRNA target sites



Mutation Mutation ID Sample Name Cancer Type
chr12:g.43468652G>C COSM693984 TCGA-18-4083-01 [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-526b-5p tattaaTCAAGAaaa CUCUUGAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-578 tattaatCAAGAAaa CUUCUUGU m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-526b-5p tattaaTCAAGAaaa CUCUUGAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-578 tattaatCAAGAAaa CUUCUUGU m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-526b-5p tattaaTCAAGAaaa CUCUUGAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-578 tattaatCAAGAAaa CUUCUUGU m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460

Mutation Mutation ID Sample Name Cancer Type
chr12:g.43468652G>A COSM3460822 TCGA-EE-A20C-06 [skin][NS][malignant_melanoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4477a taTTAATAaagaaaa CUAUUAAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4477a taTTAATAaagaaaa CUAUUAAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4477a taTTAATAaagaaaa CUAUUAAG m6b Created HPCB1_10130_G12684.1_43862460
hsa-miR-4659a-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-4659b-3p tattaatGAAGAAAa UUUCUUCU m7a Disrupted HPCB1_10130_G12684.1_43862460
hsa-miR-6875-3p tattaatGAAGAAaa AUUCUUCC m6b Disrupted HPCB1_10130_G12684.1_43862460

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

Genome Browser