SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
Transcript ID: NR_103740
Gene Symbol: ABCA12
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Browse Pathways

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr2:g.215015517C>G COSM2717081 LS513 [large_intestine][colon][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSD1_5802_G7507.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSD1_5802_G7507.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSD1_5802_G7507.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSD1_5802_G7507.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSD1_5802_G7507.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSD3_6076_G8116.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSD3_6076_G8116.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSD3_6076_G8116.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSD3_6076_G8116.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSD3_6076_G8116.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSEF_13572_G16328.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSEF_13572_G16328.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSEF_13572_G16328.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSEF_13572_G16328.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSEF_13572_G16328.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSLB_4554_G5541.1_215880249
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSLB_4554_G5541.1_215880249
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSLB_4554_G5541.1_215880249
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSLB_4554_G5541.1_215880249
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSLB_4554_G5541.1_215880249
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSD1_5802_G7507.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSD1_5802_G7507.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSD1_5802_G7507.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSD1_5802_G7507.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSD1_5802_G7507.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSD3_6076_G8116.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSD3_6076_G8116.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSD3_6076_G8116.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSD3_6076_G8116.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSD3_6076_G8116.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSEF_13572_G16328.1_215880247
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSEF_13572_G16328.1_215880247
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSEF_13572_G16328.1_215880247
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSEF_13572_G16328.1_215880247
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSEF_13572_G16328.1_215880247
hsa-miR-1244 tgcACTACTTaaaca AAGUAGUU m7a Disrupted HPSLB_4554_G5541.1_215880249
hsa-miR-3923 tgcACTAGTTaaaca AACUAGUA m7a Created HPSLB_4554_G5541.1_215880249
hsa-miR-552-5p tgcactaGTTAAACa GUUUAACC m7a Created HPSLB_4554_G5541.1_215880249
hsa-miR-562 tgcaCTACTTaaaca AAAGUAGC m6b Disrupted HPSLB_4554_G5541.1_215880249
hsa-miR-708-3p tgcaCTAGTTaaaca CAACUAGA m6b Created HPSLB_4554_G5541.1_215880249

Mutation Mutation ID Sample Name Cancer Type
chr2:g.215011590A>G COSM4133427 PTC-28C [thyroid][NS][other][neoplasm]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-1254 tctcCCAGGCattat AGCCUGGA m6b Created HPSEF_13571_G16327.1_215876317
hsa-miR-155-5p tctcccaAGCATTAt UUAAUGCU m7b Disrupted HPSEF_13571_G16327.1_215876317
hsa-miR-30c-1-3p TCTCCCAGgcattat CUGGGAGA m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-30c-2-3p TCTCCCAGgcattat CUGGGAGA m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-3192-5p tCTCCCAGgcattat UCUGGGAG m7b Created HPSEF_13571_G16327.1_215876317
hsa-miR-661 tctCCCAGGCAttat UGCCUGGG m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-887-5p tCTCCCAAGcattat CUUGGGAG m8a (m8a->m7a) HPSEF_13571_G16327.1_215876317
hsa-miR-1254 tctcCCAGGCattat AGCCUGGA m6b Created HPSEF_13571_G16327.1_215876317
hsa-miR-155-5p tctcccaAGCATTAt UUAAUGCU m7b Disrupted HPSEF_13571_G16327.1_215876317
hsa-miR-30c-1-3p TCTCCCAGgcattat CUGGGAGA m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-30c-2-3p TCTCCCAGgcattat CUGGGAGA m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-3192-5p tCTCCCAGgcattat UCUGGGAG m7b Created HPSEF_13571_G16327.1_215876317
hsa-miR-661 tctCCCAGGCAttat UGCCUGGG m8a Created HPSEF_13571_G16327.1_215876317
hsa-miR-887-5p tCTCCCAAGcattat CUUGGGAG m8a (m8a->m7a) HPSEF_13571_G16327.1_215876317

Mutation Mutation ID Sample Name Cancer Type
chr2:g.215011583T>C COSM1614317 HCC128 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite miRSeed SeedClass FuncClass Cluster ID
hsa-miR-4803 agcaTTATGTTctca UAACAUAA m7b Disrupted HPSEF_13571_G16327.1_215876317
hsa-miR-4803 agcaTTATGTTctca UAACAUAA m7b Disrupted HPSEF_13571_G16327.1_215876317

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.

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