SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_178457 |
---|---|
Gene Symbol: | ZNF831 |
Description: | Homo sapiens zinc finger protein 831 (ZNF831), mRNA. |
Gene Location: | chr20(+):57766074-57834167 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59254921C>T | 9_22814 | CRC-3-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-141-3p |
cagccgCAGTGTTccccag |
2 |
UAACACUG | m7b | Created | 0.062 | 0.086 |
-1.01 |
|
hsa-miR-200a-3p |
cagccgCAGTGTTccccag |
2 |
UAACACUG | m7b | Created | 0.065 | 0.089 |
-1.19 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59255866A>G | COSN5975724 | RK308_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-141-3p |
ttcccCAGTGTTccaagcc |
1 |
UAACACUG | m7b | Created | 0.062000 | 0.173000 | No effect | |
hsa-miR-200a-3p |
ttcccCAGTGTTccaagcc |
1 |
UAACACUG | m7b | Created | 0.065000 | 0.176000 |
0.080000 |
|
hsa-miR-200b-3p |
ttcccCAGTATTccaagcc |
3 |
UAAUACUG | m7b | Disrupted | 0.214000 | 0.072000 |
0.080000 |
|
hsa-miR-200c-3p |
ttcccCAGTATTccaagcc |
3 |
UAAUACUG | m7b | Disrupted | 0.214000 | 0.072000 |
0.040000 |
|
hsa-miR-3673 |
ttccccagtATTCCAagcc |
11 |
AUGGAAUG | m6b | Disrupted | 0.091000 | no TS |
0.280000 |
|
hsa-miR-429 |
ttcccCAGTATTccaagcc |
3 |
UAAUACUG | m7b | Disrupted | 0.223000 | 0.072000 |
0.050000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59256191A>C | COSN7099767 | 8067180 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-374c-3p |
ctgtgaCTAAGTatggtca |
3 |
CACUUAGC | m6b | Disrupted | 0.061000 | no TS |
0.610000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59256196G>A | COSN4971003 | SS6003302 | [oesophagus][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-591 |
actaagtATGGTCaaattt |
2 |
AGACCAUG | m6b | Disrupted | -0.345000 | -0.321000 | No effect | |
hsa-miR-625-3p |
actaagTATAGTCaaattt |
0 | GACUAUAG | m7a | Created | NA | NA | No effect | |
hsa-miR-591 |
actaagtATGGTCaaattt |
2 |
AGACCAUG | m6b | Disrupted | -0.345000 | -0.321000 | No effect | |
hsa-miR-625-3p |
actaagTATAGTCaaattt |
0 | GACUAUAG | m7a | Created | NA | NA | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59256686A>G | COSN7099768 | 8057726 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-141-5p |
atggcttGAAGATattccc |
0 | CAUCUUCC | m6b | Disrupted | 0.092000 | no TS | No effect | |
hsa-miR-498 |
atgGCTTGAAgatattccc |
2 |
UUUCAAGC | m7b | (m7b->m6b) | 0.095000 | no TS |
2.280000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59256704A>G | COSN5446687 | RK087_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-218-1-3p |
ccatggGGAACCATtgcca |
2 |
AUGGUUCC | m8a | Disrupted | -0.157000 | -0.214000 |
-0.020000 |
|
hsa-miR-218-2-3p |
ccatgggGAACCATtgcca |
1 |
CAUGGUUC | m7b | Disrupted | 0.122000 | no TS |
-0.030000 |
|
hsa-miR-642b-5p |
ccatgGGGAACCattgcca |
0 | GGUUCCCU | m7a | Disrupted | NA | NA |
0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59257297C>G | 12_89 | NA | [upper_aerodigestive_tract][mouth][carcinoma][squamous_cell_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1206 |
actttatATGAACAtgaat |
0 | UGUUCAUG | m7a | Created | 0.056 | 0.095 |
1.59 |
|
hsa-miR-5007-3p |
actttATATGAacatgaat |
0 | AUCAUAUG | m6b | Created | 0.026 | 0.119 |
-0.18 |
|
hsa-miR-5007-3p |
actttATATGAacatgaat |
2 |
AUCAUAUG | m6b | Created | 0.026000 | 0.119000 |
-0.180000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr20:g.59257370A>T | COSN1878074 | RK031_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-2116-3p |
atgaccctATGGGAGctgg |
0 | CCUCCCAU | m7b | Created | no TS | 0.022000 |
-0.220000 |
|
hsa-miR-4287 |
atgaccctAAGGGAGctgg |
0 | UCUCCCUU | m7b | Disrupted | 0.008000 | 0.006000 |
1.620000 |
|
hsa-miR-4685-3p |
atgaccctAAGGGAGctgg |
0 | UCUCCCUU | m7b | Disrupted | 0.064000 | 0.015000 | No effect | |
hsa-miR-2116-3p |
atgaccctATGGGAGctgg |
0 | CCUCCCAU | m7b | Created | no TS | 0.022 |
-0.22 |
|
hsa-miR-4287 |
atgaccctAAGGGAGctgg |
0 | UCUCCCUU | m7b | Disrupted | 0.008 | 0.006 |
1.62 |
|
hsa-miR-4685-3p |
atgaccctAAGGGAGctgg |
0 | UCUCCCUU | m7b | Disrupted | 0.064 | 0.015 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr20:g.59258034C>A | COSN1878075 | RK133_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3173-3p |
aactggaatCCTCCTTctt |
4 |
AAAGGAGG | m7b | (m7b->m6c) | 0.026000 | 0.124000 |
0.020000 |
hsa-miR-496 |
aactggAATACTCcttctt |
0 | UGAGUAUU | m7b | Created | no TS | 0.015000 |
-1.310000 |
hsa-miR-3173-3p |
aactggaatCCTCCTTctt |
0 | AAAGGAGG | m7b | (m7b->m6c) | 0.026 | 0.124 |
0.02 |
hsa-miR-496 |
aactggAATACTCcttctt |
0 | UGAGUAUU | m7b | Created | no TS | 0.015 |
-1.31 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
59254921 | rs78986299 | C | C |
hsa-miR-1292-5p |
0 |
ccgcagCGTTCCC |
Disrupted |
N |
-0.158 |
T |
hsa-miR-141-3p hsa-miR-200a-3p |
1 1 |
ccgCAGTGTTccc ccgCAGTGTTccc |
Created Created |
N N |
0.024 0.024 |
|||
59255010 | rs73916204 | G | G |
hsa-miR-591 |
2 |
caaATGGTCAacg |
Disrupted |
N |
-0.103 |
A |
hsa-miR-579-3p hsa-miR-664b-3p |
1 1 |
CAAATGAtcaacg CAAATGAtcaacg |
Created Created |
N N |
0.021 0.012 |
|||
59255693 | rs6092761 | C | C |
hsa-miR-1247-5p |
9 |
tcgtGACGGGAgc |
Disrupted |
N |
-0.124 |
T |
hsa-miR-2116-3p hsa-miR-6884-3p |
8 8 |
tcgtgATGGGAGc tcGTGATGGgagc |
Created Created |
N N |
-0.02 -0.008 |
|||
59256367 | rs138363135 | G | G |
hsa-miR-2681-5p hsa-miR-4287 hsa-miR-4685-3p hsa-miR-4777-3p |
2 5 5 2 |
aagggaGGTAAAA AAGGGAGgtaaaa AAGGGAGgtaaaa aaggGAGGTAAaa |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.011 0.006 0.015 -0.02 |
T |
hsa-miR-188-5p hsa-miR-6866-3p |
5 5 |
AAGGGATgtaaaa AAGGGATgtaaaa |
Created Created |
N N |
-0.003 -0.022 |
|||
59257445 | rs76671897 | C | C |
hsa-miR-1206 hsa-miR-4445-5p hsa-miR-5186 hsa-miR-6853-3p |
3 6 6 3 |
aATGAACAatctc aatgAACAATCtc aatgaaCAATCTC AATGAACAatctc |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.044 -0.011 -0.036 0.115 |
T |
hsa-miR-664a-3p |
3 |
AATGAATAatctc |
Created |
N |
0.22 |