SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_080764 |
---|---|
Gene Symbol: | ZNF280B |
Description: | Homo sapiens zinc finger protein 280B (ZNF280B), mRNA. |
Gene Location: | chr22(-):22838771-22863505 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22484753T>C | COSN1895385 | RK029_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-138-5p |
ggaaagcgACCAGCatcaa |
0 | AGCUGGUG | m6b | Created | no TS | -0.131000 | No effect | |
hsa-miR-3663-5p |
ggaaagcGACCAGCatcaa |
0 | GCUGGUCU | m7a | Created | NA | NA |
-0.380000 |
|
hsa-miR-4728-3p |
ggaaagcgaTCAGCATcaa |
0 | CAUGCUGA | m7b | (m7b->m6b) | -0.264000 | -0.119000 |
0.370000 |
|
hsa-miR-4790-5p |
ggAAAGCGATcagcatcaa |
1 |
AUCGCUUU | m8a | (m8a->m7b) | -0.198000 | -0.171000 |
0.340000 |
|
hsa-miR-138-5p |
ggaaagcgACCAGCatcaa |
0 | AGCUGGUG | m6b | Created | no TS | -0.131000 | No effect | |
hsa-miR-3663-5p |
ggaaagcGACCAGCatcaa |
0 | GCUGGUCU | m7a | Created | NA | NA |
-0.380000 |
|
hsa-miR-4728-3p |
ggaaagcgaTCAGCATcaa |
0 | CAUGCUGA | m7b | (m7b->m6b) | -0.264000 | -0.119000 |
0.370000 |
|
hsa-miR-4790-5p |
ggAAAGCGATcagcatcaa |
1 |
AUCGCUUU | m8a | (m8a->m7b) | -0.198000 | -0.171000 |
0.340000 |
|
hsa-miR-138-5p |
ggaaagcgACCAGCatcaa |
0 | AGCUGGUG | m6b | Created | no TS | -0.131 | No effect | |
hsa-miR-3663-5p |
ggaaagcGACCAGCatcaa |
0 | GCUGGUCU | m7a | Created | NA | NA |
-0.38 |
|
hsa-miR-4728-3p |
ggaaagcgaTCAGCATcaa |
0 | CAUGCUGA | m7b | (m7b->m6b) | -0.264 | -0.119 |
0.37 |
|
hsa-miR-4790-5p |
ggAAAGCGATcagcatcaa |
0 | AUCGCUUU | m8a | (m8a->m7b) | -0.198 | -0.171 |
0.34 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22484970G>A | COSN10028387 | C0020T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3135a |
ttccCCTAGGCctgcatgg |
8 |
UGCCUAGG | m7b | Disrupted | -0.135000 | no TS |
5.780000 |
|
hsa-miR-3665 |
ttcccctagACCTGCatgg |
0 | AGCAGGUG | m6b | Created | no TS | -0.108000 |
-0.720000 |
|
hsa-miR-4650-5p |
ttcccctAGGCCTGcatgg |
9 |
UCAGGCCU | m7b | Disrupted | -0.124000 | no TS |
0.030000 |
|
hsa-miR-601 |
ttcccCTAGACCtgcatgg |
0 | UGGUCUAG | m7b | Created | no TS | -0.100000 |
-2.600000 |
|
hsa-miR-657 |
ttcccctagACCTGCatgg |
0 | GGCAGGUU | m6b | Created | no TS | -0.115000 |
-0.260000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22485013C>A | COSN195221 | PD4116a | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1264 |
atccaAAGACTTtgcacat |
6 |
CAAGUCUU | m7b | Disrupted | 0.022000 | 0.068000 | No effect | |
hsa-miR-518a-5p |
atccaaagaCTTTGCAcat |
8 |
CUGCAAAG | m7b | (m7b->m6b) | -0.061000 | no TS |
-2.200000 |
|
hsa-miR-527 |
atccaaagaCTTTGCAcat |
8 |
CUGCAAAG | m7b | (m7b->m6b) | -0.061000 | no TS |
-2.200000 |
|
hsa-miR-1264 |
atccaAAGACTTtgcacat |
0 | CAAGUCUU | m7b | Disrupted | 0.022 | 0.068 | No effect | |
hsa-miR-518a-5p |
atccaaagaCTTTGCAcat |
0 | CUGCAAAG | m7b | (m7b->m6b) | -0.061 | no TS |
-2.2 |
|
hsa-miR-527 |
atccaaagaCTTTGCAcat |
0 | CUGCAAAG | m7b | (m7b->m6b) | -0.061 | no TS |
-2.2 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22485192G>C | COSN10028388 | C0062T | [kidney][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4636 |
tgctcttaACGAGTacata |
0 | AACUCGUG | m6b | Created | no TS | -0.172000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22485480G>T | COSN8014476 | 8068976 | [pancreas][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3133 |
ctatactaGTTCTTTtcag |
7 |
UAAAGAAC | m7b | Created | 0.094000 | 0.125000 |
-1.010000 |
|
hsa-miR-3923 |
ctaTACTAGTTcttttcag |
0 | AACUAGUA | m8a | Created | no TS | -0.095000 |
-4.360000 |
|
hsa-miR-4511 |
ctatactAGTTCTTttcag |
0 | GAAGAACU | m7b | Created | -0.112000 | -0.136000 |
-0.010000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22486085T>A | COSN5989317 | RK181_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5003-3p |
tgcaaGAAAAGTctctcta |
0 | UACUUUUC | m7b | Created | no TS | 0.104000 |
-0.980000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr22:g.22486496G>T | COSN1895386 | RK024_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-320a |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-3.380000 |
|
hsa-miR-320b |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-3.380000 |
|
hsa-miR-320c |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-0.940000 |
|
hsa-miR-320d |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-1.650000 |
|
hsa-miR-320e |
gccaCAGCTTTaaagcaag |
0 | AAAGCUGG | m7a | Created | NA | NA |
-0.140000 |
|
hsa-miR-4429 |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.200000 |
-8.420000 |
|
hsa-miR-9-3p |
gccacAGCTTTAaagcaag |
0 | AUAAAGCU | m7b | Created | no TS | 0.120000 |
0.370000 |
|
hsa-miR-320a |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-3.380000 |
|
hsa-miR-320b |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-3.380000 |
|
hsa-miR-320c |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-0.940000 |
|
hsa-miR-320d |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.169000 |
-1.650000 |
|
hsa-miR-320e |
gccaCAGCTTTaaagcaag |
0 | AAAGCUGG | m7a | Created | NA | NA |
-0.140000 |
|
hsa-miR-4429 |
gccaCAGCTTTaaagcaag |
2 |
AAAAGCUG | m7b | Created | -0.149000 | -0.200000 |
-8.420000 |
|
hsa-miR-9-3p |
gccacAGCTTTAaagcaag |
0 | AUAAAGCU | m7b | Created | no TS | 0.120000 |
0.370000 |
|
hsa-miR-320a |
gccaCAGCTTTaaagcaag |
0 | AAAAGCUG | m7b | Created | -0.149 | -0.169 |
-3.38 |
|
hsa-miR-320b |
gccaCAGCTTTaaagcaag |
0 | AAAAGCUG | m7b | Created | -0.149 | -0.169 |
-3.38 |
|
hsa-miR-320c |
gccaCAGCTTTaaagcaag |
0 | AAAAGCUG | m7b | Created | -0.149 | -0.169 |
-0.94 |
|
hsa-miR-320d |
gccaCAGCTTTaaagcaag |
0 | AAAAGCUG | m7b | Created | -0.149 | -0.169 |
-1.65 |
|
hsa-miR-320e |
gccaCAGCTTTaaagcaag |
0 | AAAGCUGG | m7a | Created | NA | NA |
-0.14 |
|
hsa-miR-4429 |
gccaCAGCTTTaaagcaag |
0 | AAAAGCUG | m7b | Created | -0.149 | -0.2 |
-8.42 |
|
hsa-miR-9-3p |
gccacAGCTTTAaagcaag |
0 | AUAAAGCU | m7b | Created | no TS | 0.12 |
0.37 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr22:g.22487282A>T | COSN8014477 | 8015259 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3163 |
tttATTTTATttttttgta |
9 |
UAUAAAAU | m7b | (m6c->m7b) | -0.058000 | -0.048000 |
-0.200000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
22484750 | rs414781 | T | G |
hsa-miR-4728-3p hsa-miR-8075 |
0 |
cgaTCAGCATcaa cgATCAGCAtcaa |
Created Created |
N N |
-0.145 -0.092 |
T |
hsa-miR-1272 hsa-miR-3682-3p |
0 |
cgaTCATCATcaa cgATCATCAtcaa |
Disrupted Disrupted |
N N |
-0.094 -0.122 |
|||
22487462 | rs6002491 | A | |||||||
T |
hsa-miR-3163 |
2 |
ATTTTATtttttt |
Created |
N |
-0.071 |