SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000380 |
---|---|
Gene Symbol: | XPA |
Description: | Homo sapiens xeroderma pigmentosum, complementation group A (XPA), transcript variant 1, mRNA. |
Gene Location: | chr9(-):100437190-100459691 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.97675017C>T | COSN9690668 | AOCS-091-1-3 | [ovary][NS][other][neoplasm] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4643 |
ggttctagtCATGTGTttt |
2 |
GACACAUG | m7b | (m7b->m6b) | -0.176000 | no TS |
0.130000 |
|
hsa-miR-4789-3p |
ggttctagtTATGTGTttt |
0 | CACACAUA | m7b | (m6b->m7b) | no TS | -0.129000 |
-4.780000 |
|
hsa-miR-708-3p |
ggtTCTAGTTatgtgtttt |
0 | CAACUAGA | m7b | (m6c->m7b) | no TS | -0.256000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.97675344C>T | COSN1370516 | HCC14T | [liver][NS][carcinoma][hepatocellular_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3662 |
aagcaaCATTTTCatagat |
0 | GAAAAUGA | m7a | Created | NA | NA |
-4.460000 |
hsa-miR-409-3p |
aagCAACATTttcatagat |
0 | GAAUGUUG | m7b | (m6c->m7b) | no TS | -0.153000 |
-1.720000 |
hsa-miR-4426 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.320000 |
hsa-miR-4647 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.970000 |
hsa-miR-4699-5p |
aagcaacATCTTCatagat |
2 |
AGAAGAUU | m6b | Disrupted | -0.114000 | no TS |
1.920000 |
hsa-miR-3662 |
aagcaaCATTTTCatagat |
0 | GAAAAUGA | m7a | Created | NA | NA |
-4.460000 |
hsa-miR-409-3p |
aagCAACATTttcatagat |
0 | GAAUGUUG | m7b | (m6c->m7b) | no TS | -0.153000 |
-1.720000 |
hsa-miR-4426 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.320000 |
hsa-miR-4647 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.970000 |
hsa-miR-4699-5p |
aagcaacATCTTCatagat |
2 |
AGAAGAUU | m6b | Disrupted | -0.114000 | no TS |
1.920000 |
hsa-miR-3662 |
aagcaaCATTTTCatagat |
0 | GAAAAUGA | m7a | Created | NA | NA |
-4.46 |
hsa-miR-409-3p |
aagCAACATTttcatagat |
0 | GAAUGUUG | m7b | (m6c->m7b) | no TS | -0.153 |
-1.72 |
hsa-miR-4426 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.32 |
hsa-miR-4647 |
aagcaaCATCTTCatagat |
0 | GAAGAUGG | m7a | Disrupted | NA | NA |
0.97 |
hsa-miR-4699-5p |
aagcaacATCTTCatagat |
0 | AGAAGAUU | m6b | Disrupted | -0.114 | no TS |
1.92 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
97675011 | rs143474170 | T | T |
hsa-miR-4643 |
2 |
CATGTGTttttta |
Disrupted |
N |
-0.176 |
C |
hsa-miR-548e-5p hsa-miR-5589-3p hsa-miR-6835-3p |
2 2 2 |
catgTGCTTTTta CATGTGCttttta catGTGCTTTtta |
Created Created Created |
N N N |
-0.036 -0.257 -0.162 |