SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_001025367 |
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Gene Symbol: | VEGFA |
Description: | Homo sapiens vascular endothelial growth factor A (VEGFA), transcript variant 5, mRNA. |
Gene Location: | chr6(+):43737945-43754223 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43784674C>T | COSN4893933 | PCSI_0038_Pa_X | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43784799C>T | COSN167777 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3619-3p |
gacccagcATGGTCCCtct |
0 | GGGACCAU | m8a | Created | no TS | -0.137000 |
-8.280000 |
hsa-miR-591 |
gacccagCATGGTCcctct |
0 | AGACCAUG | m7b | Created | no TS | -0.128000 |
-0.010000 |
hsa-miR-3619-3p |
gacccagcATGGTCCCtct |
0 | GGGACCAU | m8a | Created | no TS | -0.137 |
-8.28 |
hsa-miR-591 |
gacccagCATGGTCcctct |
0 | AGACCAUG | m7b | Created | no TS | -0.128 |
-0.01 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43785569T>A | COSN2162691 | RK098_C01 | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3927 |
tcatccTCTACCTGctccc |
0 | CAGGUAGA | m8a | Created | no TS | 0.020000 |
-0.460000 |
hsa-miR-4451 |
tcatcCTCTACCtgctccc |
0 | UGGUAGAG | m7b | Created | -0.055000 | -0.100000 | No effect |
hsa-miR-877-5p |
tcaTCCTCTACctgctccc |
0 | GUAGAGGA | m8a | Created | no TS | -0.028000 |
-1.580000 |
hsa-miR-3927 |
tcatccTCTACCTGctccc |
0 | CAGGUAGA | m8a | Created | no TS | 0.02 |
-0.46 |
hsa-miR-4451 |
tcatcCTCTACCtgctccc |
0 | UGGUAGAG | m7b | Created | -0.055 | -0.1 | No effect |
hsa-miR-877-5p |
tcaTCCTCTACctgctccc |
0 | GUAGAGGA | m8a | Created | no TS | -0.028 |
-1.58 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43785920T>C | COSN7883560 | 8067242 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-451b |
gctctcTCTTGCTctctta |
0 | UAGCAAGA | m7b | Disrupted | -0.277000 | -0.181000 |
-0.020000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43785973C>G | COSN8514383 | 1953_T | [lung][NS][carcinoma][squamous_cell_carcinoma] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-185-5p |
ccaatctcTCTCTCCctga |
14 |
UGGAGAGA | m7b | Disrupted | -0.377000 | -0.284000 |
1.600000 |
hsa-miR-4306 |
ccaatctcTCTCTCCctga |
14 |
UGGAGAGA | m7b | Disrupted | -0.386000 | -0.293000 |
1.750000 |
hsa-miR-4524a-3p |
ccaatctCTGTCTCcctga |
0 | UGAGACAG | m7b | Created | no TS | -0.117000 |
-2.550000 |
hsa-miR-4644 |
ccaatctcTCTCTCCctga |
14 |
UGGAGAGA | m7b | Disrupted | -0.386000 | -0.265000 |
5.620000 |
hsa-miR-4756-3p |
ccaATCTCTGtctccctga |
0 | CCAGAGAU | m7b | (m6b->m7b) | no TS | -0.075000 |
-2.490000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.43786143G>A | COSN7883561 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-1185-1-3p |
tatttgtgTGTATATatat |
0 | AUAUACAG | m7a | Disrupted | NA | NA | No effect |
hsa-miR-1185-2-3p |
tatttgtgTGTATATatat |
0 | AUAUACAG | m7a | Disrupted | NA | NA | No effect |
hsa-miR-329 |
tatttGTGTGTatatatat |
0 | AACACACC | m6b | Disrupted | -0.153000 | no TS |
2.750000 |
hsa-miR-362-3p |
tatttGTGTGTatatatat |
0 | AACACACC | m6b | Disrupted | -0.167000 | no TS |
5.810000 |
hsa-miR-3941 |
tatttGTGTGTAtatatat |
0 | UUACACAC | m7b | Disrupted | -0.249000 | no TS |
1.970000 |
hsa-miR-466 |
tatttgTGTGTATatatat |
0 | AUACACAU | m7a | Disrupted | NA | NA |
4.280000 |
hsa-miR-4789-5p |
tatttgtGTGTATAtatat |
0 | GUAUACAC | m7b | Disrupted | -0.196000 | -0.219000 |
-0.090000 |
hsa-miR-5011-5p |
tatttgtgTATATATAtat |
17 |
UAUAUAUA | m8a | Created | -2.347000 | -2.526000 |
-0.090000 |