SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database

Prediction criteria: TargetScan sites only     All 6mer or longer seed matches

RefSeq ID: NM_001025366
Gene Symbol: VEGFA
Description: Homo sapiens vascular endothelial growth factor A (VEGFA), transcript variant 5, mRNA.
Gene Location: chr6(+):43737945-43754223
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Browse Pathways

Somatic mutations that impact miRNA target sites




Mutation Mutation ID Sample Name Cancer Type
chr6:g.43784674C>T COSN4893933 PCSI_0038_Pa_X [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
No TargetScan sites are altered. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.


Mutation Mutation ID Sample Name Cancer Type
chr6:g.43784799C>T COSN167777 GC8_T [stomach][NS][carcinoma][adenocarcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3619-3p gacccagcATGGTCCCtct
0 GGGACCAU m8a Created no TS -0.137000 -8.280000
hsa-miR-591 gacccagCATGGTCcctct
0 AGACCAUG m7b Created no TS -0.128000 -0.010000
hsa-miR-3619-3p gacccagcATGGTCCCtct
0 GGGACCAU m8a Created no TS -0.137 -8.28
hsa-miR-591 gacccagCATGGTCcctct
0 AGACCAUG m7b Created no TS -0.128 -0.01

Mutation Mutation ID Sample Name Cancer Type
chr6:g.43785569T>A COSN2162691 RK098_C01 [liver][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-3927 tcatccTCTACCTGctccc
0 CAGGUAGA m8a Created no TS 0.020000 -0.460000
hsa-miR-4451 tcatcCTCTACCtgctccc
0 UGGUAGAG m7b Created -0.055000 -0.100000 No effect
hsa-miR-877-5p tcaTCCTCTACctgctccc
0 GUAGAGGA m8a Created no TS -0.028000 -1.580000
hsa-miR-3927 tcatccTCTACCTGctccc
0 CAGGUAGA m8a Created no TS 0.02 -0.46
hsa-miR-4451 tcatcCTCTACCtgctccc
0 UGGUAGAG m7b Created -0.055 -0.1 No effect
hsa-miR-877-5p tcaTCCTCTACctgctccc
0 GUAGAGGA m8a Created no TS -0.028 -1.58

Mutation Mutation ID Sample Name Cancer Type
chr6:g.43785920T>C COSN7883560 8067242 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-451b gctctcTCTTGCTctctta
0 UAGCAAGA m7b Disrupted -0.277000 -0.181000 -0.020000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.43785973C>G COSN8514383 1953_T [lung][NS][carcinoma][squamous_cell_carcinoma]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-185-5p ccaatctcTCTCTCCctga
14
UGGAGAGA m7b Disrupted -0.377000 -0.284000 1.600000
hsa-miR-4306 ccaatctcTCTCTCCctga
14
UGGAGAGA m7b Disrupted -0.386000 -0.293000 1.750000
hsa-miR-4524a-3p ccaatctCTGTCTCcctga
0 UGAGACAG m7b Created no TS -0.117000 -2.550000
hsa-miR-4644 ccaatctcTCTCTCCctga
14
UGGAGAGA m7b Disrupted -0.386000 -0.265000 5.620000
hsa-miR-4756-3p ccaATCTCTGtctccctga
0 CCAGAGAU m7b (m6b->m7b) no TS -0.075000 -2.490000

Mutation Mutation ID Sample Name Cancer Type
chr6:g.43786143G>A COSN7883561 8016470 [pancreas][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-1185-1-3p tatttgtgTGTATATatat
0 AUAUACAG m7a Disrupted NA NA No effect
hsa-miR-1185-2-3p tatttgtgTGTATATatat
0 AUAUACAG m7a Disrupted NA NA No effect
hsa-miR-329 tatttGTGTGTatatatat
0 AACACACC m6b Disrupted -0.153000 no TS 2.750000
hsa-miR-362-3p tatttGTGTGTatatatat
0 AACACACC m6b Disrupted -0.167000 no TS 5.810000
hsa-miR-3941 tatttGTGTGTAtatatat
0 UUACACAC m7b Disrupted -0.249000 no TS 1.970000
hsa-miR-466 tatttgTGTGTATatatat
0 AUACACAU m7a Disrupted NA NA 4.280000
hsa-miR-4789-5p tatttgtGTGTATAtatat
0 GUAUACAC m7b Disrupted -0.196000 -0.219000 -0.090000
hsa-miR-5011-5p tatttgtgTATATATAtat
17
UAUAUAUA m8a Created -2.347000 -2.526000 -0.090000

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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