SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_003761 |
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Gene Symbol: | VAMP8 |
Description: | Homo sapiens vesicle-associated membrane protein 8 (endobrevin) (VAMP8), mRNA. |
Gene Location: | chr2(+):85804613-85809156 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr2:g.85581748C>T | COSN166155 | GC8_T | [stomach][NS][carcinoma][adenocarcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4709-3p |
tgcccttCTCTTCAgggac |
6 |
UUGAAGAG | m7b | Disrupted | -0.105000 | no TS |
0.290000 |
|
hsa-miR-4709-3p |
tgcccttCTCTTCAgggac |
6 |
UUGAAGAG | m7b | Disrupted | -0.105000 | no TS |
0.290000 |
|
hsa-miR-4709-3p |
tgcccttCTCTTCAgggac |
6 |
UUGAAGAG | m7b | Disrupted | -0.105000 | no TS |
0.290000 |
|
hsa-miR-4709-3p |
tgcccttCTCTTCAgggac |
6 |
UUGAAGAG | m7b | Disrupted | -0.105 | no TS |
0.29 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr2:g.85581859T>C | COSN8868361 | SNUH_G26_S1 | [haematopoietic_and_lymphoid_tissue][NS][haematopoietic_neoplasm][acute_myeloid_leukaemia] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-3529-3p |
ctgctgccaTGTTGTatgc |
2 |
AACAACAA | m6b | Disrupted | 0.004000 | no TS |
-0.500000 |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
85581748 | rs1058588 | C | C |
hsa-miR-4709-3p hsa-miR-6770-5p |
6 3 |
ccttCTCTTCAgg CCTTCTCttcagg |
Disrupted Disrupted |
N N |
-0.105 -0.115 |
85581859 | rs1010 | C | T |
hsa-miR-3529-3p hsa-miR-942-3p |
2 1 |
ctgccaTGTTGTA ctGCCATGTtgta |
Created Created |
N N |
0.004 -0.17 |