SomamiR DB 2.0
Somatic mutations altering microRNA-ceRNA interactions
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PolymiRTS Database
Prediction criteria: TargetScan sites only     All 6mer or longer seed matches
RefSeq ID: NM_080599
Gene Symbol: UPF2
Description: Homo sapiens UPF2 regulator of nonsense transcripts homolog (yeast) (UPF2), transcript variant 2, mRNA.
Gene Location: chr10(-):11962021-12085023
Browse Associations

Somatic mutations that impact miRNA target sites


Mutation Mutation ID Sample Name Cancer Type
chr10:g.11921140A>C COSN521118 TCGA-BH-A0EB-01 [breast][NS][carcinoma][NS]
miRNA Targets Table
miR ID miRSite Conservation miRSeed SeedClass FuncClass Wildtype CS+ Mutant CS+ PITA score change
hsa-miR-138-5p ggcagaaaCACCAGCctct
 11
 AGCUGGUG m7b Disrupted -0.480000 -0.287000 0.040000
hsa-miR-193b-5p ggcagAAACCCCagcctct
 0 CGGGGUUU m7b Created no TS -0.217000 -0.010000
hsa-miR-3170 ggcagaAACCCCAGcctct
 0 CUGGGGUU m8a Created no TS -0.112000 -1.290000
hsa-miR-4505 ggcagaaacCCCAGCCTct
 0 AGGCUGGG m8a (m7a->m8a) no TS -0.151000 -0.050000
hsa-miR-4694-5p ggcagaAACACCagcctct
 10
 AGGUGUUA m6b Disrupted -0.074000 no TS 1.810000
hsa-miR-4731-5p ggcagaaaCCCCAGCctct
 0 UGCUGGGG m7b Created no TS -0.212000 No effect
hsa-miR-138-5p ggcagaaaCACCAGCctct
 11
 AGCUGGUG m7b Disrupted -0.480000 -0.287000 0.040000
hsa-miR-193b-5p ggcagAAACCCCagcctct
 0 CGGGGUUU m7b Created no TS -0.217000 -0.010000
hsa-miR-3170 ggcagaAACCCCAGcctct
 0 CUGGGGUU m8a Created no TS -0.112000 -1.290000
hsa-miR-4505 ggcagaaacCCCAGCCTct
 0 AGGCUGGG m8a (m7a->m8a) no TS -0.151000 -0.050000
hsa-miR-4694-5p ggcagaAACACCagcctct
 10
 AGGUGUUA m6b Disrupted -0.074000 no TS 1.810000
hsa-miR-4731-5p ggcagaaaCCCCAGCctct
 0 UGCUGGGG m7b Created no TS -0.212000 No effect
hsa-miR-138-5p ggcagaaaCACCAGCctct
 11
 AGCUGGUG m7b Disrupted -0.480000 -0.287000 0.040000
hsa-miR-193b-5p ggcagAAACCCCagcctct
 0 CGGGGUUU m7b Created no TS -0.217000 -0.010000
hsa-miR-3170 ggcagaAACCCCAGcctct
 0 CUGGGGUU m8a Created no TS -0.112000 -1.290000
hsa-miR-4505 ggcagaaacCCCAGCCTct
 0 AGGCUGGG m8a (m7a->m8a) no TS -0.151000 -0.050000
hsa-miR-4694-5p ggcagaAACACCagcctct
 10
 AGGUGUUA m6b Disrupted -0.074000 no TS 1.810000
hsa-miR-4731-5p ggcagaaaCCCCAGCctct
 0 UGCUGGGG m7b Created no TS -0.212000 No effect

*By default, only target sites identified by TargetScan are displayed. To display all potentially impacted target sites, select "All 6mer or longer seed matches" above.



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