SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
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RefSeq ID: | NM_025218 |
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Gene Symbol: | ULBP1 |
Description: | Homo sapiens UL16 binding protein 1 (ULBP1), mRNA. |
Gene Location: | chr6(+):150285142-150294846 |
Browse Associations | |
Browse Pathways |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972278T>C | ICGC_sm200271 | RK041_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-29a-5p |
ttcgaAAATCAGTgctgga |
0 | ACUGAUUU | m8a | Created | no TS | 0.037 |
-0.1 |
|
hsa-miR-4735-5p |
ttcgaAAATTAGtgctgga |
0 | CCUAAUUU | m7b | Disrupted | 0.103 | no TS |
0.93 |
|
hsa-miR-4775 |
ttcgAAAATTAgtgctgga |
0 | UUAAUUUU | m7b | Disrupted | 0.276 | 0.055 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972510G>A | ICGC_7BB8761A-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-3189-5p |
acaaATGGGGCctcattaa |
0 | UGCCCCAU | m7b | Disrupted | -0.149 | no TS | No effect | |
hsa-miR-5008-5p |
acaaatgGGGCCTCAttaa |
0 | UGAGGCCC | m8a | Disrupted | -0.292 | no TS |
-2.65 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972514C>A | ICGC_A15123EA-2A78-11E2-8335-12FD496BB9B8 | CPCG_0102_Pr_P_P2 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-5008-5p |
atgGGGCCTCAttaaacta |
0 | UGAGGCCC | m8a | Disrupted | -0.292 | no TS |
1.02 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972540A>C | ICGC_7BB87AE8-2A78-11E2-96E7-04FD496BB9B8 | CPCG_0102_Pr_P_P1 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-4652-3p |
tctgcACAGAAaaagaaac |
0 | GUUCUGUU | m6b | Disrupted | -0.033 | -0.088 |
0.12 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972603C>G | 9_45526 | CRC-5-Tumor | Colorectal adenocarcinoma | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972712T>C | ICGC_C346153C-2A78-11E2-BDED-1EFD496BB9B8 | CPCG_0103_Pr_P_P4 | ProstateCancer(OICR,CA) | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1253 |
cagacaCTTCTCaaaagaa |
0 | AGAGAAGA | m6b | Created | -0.073 | -0.069 |
-0.04 |
|
hsa-miR-548t-5p |
cagaCACTTTTcaaaagaa |
0 | CAAAAGUG | m7b | Disrupted | 0.035 | no TS |
0.27 |
|
hsa-miR-580 |
cagacacTTCTCAAaagaa |
0 | UUGAGAAU | m7a | Created | -0.053 | -0.048 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr6:g.149972799T>G | ICGC_sm453233 | RK126_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1915-5p |
aaactGCAAGGagttacca |
0 | ACCUUGCC | m6b | Created | -0.085 | -0.163 |
-1.29 |
|
hsa-miR-25-3p |
aaacTGCAATGagttacca |
0 | CAUUGCAC | m7a | Disrupted | NA | NA |
-0.16 |
|
hsa-miR-4317 |
aaactGCAATGagttacca |
0 | ACAUUGCC | m6b | Disrupted | -0.137 | -0.088 |
0.01 |
|
hsa-miR-4764-3p |
aaactgcaaGGAGTTAcca |
0 | UUAACUCC | m7b | (m6c->m7b) | no TS | -0.082 |
-6.14 |
|
hsa-miR-502-5p |
aaactGCAAGGAgttacca |
0 | AUCCUUGC | m7b | Created | -0.171 | -0.298 |
-1.15 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr6:g.149973333C>T | 10_18690 | 6408 | Breast cancer | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
149972277 | rs12661158 | T | T |
hsa-miR-4735-5p hsa-miR-4775 hsa-miR-590-3p |
2 2 2 |
cgaAAATTAGtgc cgAAAATTAgtgc cgAAAATTAgtgc |
Disrupted Disrupted Disrupted |
N N N |
0.103 0.221 0.196 |
149972494 | rs4388299 | G | G |
hsa-miR-4652-3p hsa-miR-4743-3p |
2 2 |
aaAACAGAAAttg aaaACAGAAAttg |
Disrupted Disrupted |
N N |
0.011 0.023 |
149972666 | rs75643450 | A | A |
hsa-miR-4659a-3p hsa-miR-4659b-3p hsa-miR-4778-3p hsa-miR-6875-3p |
2 2 2 2 |
agcaAGAAGAAAa agcaAGAAGAAAa agcAAGAAGAaaa agcaaGAAGAAAa |
Disrupted Disrupted Disrupted Disrupted |
N N N N |
0.007 0.007 0.032 0.047 |
G |
hsa-miR-1915-5p hsa-miR-4279 hsa-miR-502-5p hsa-miR-629-3p hsa-miR-6841-3p |
2 2 2 2 2 |
aGCAAGGAgaaaa agcaAGGAGAAaa aGCAAGGAgaaaa agcaaGGAGAAAa aGCAAGGAgaaaa |
Created Created Created Created Created |
N N N N N |
-0.08 -0.03 -0.136 -0.015 -0.083 |
|||
149972708 | rs141741582 | A | A |
hsa-miR-548az-5p hsa-miR-548t-5p |
2 2 |
acagaCACTTTTc acagaCACTTTTc |
Disrupted Disrupted |
N N |
0.035 0.035 |
149972795 | rs146225839 | G | G |
hsa-miR-4317 hsa-miR-4328 hsa-miR-6516-5p |
2 1 2 |
aaaactGCAATGA AAAACTGcaatga aaaACTGCAAtga |
Disrupted Disrupted Disrupted |
N N N |
-0.049 0.038 -0.096 |
T |
hsa-miR-3616-5p hsa-miR-4670-3p hsa-miR-573 |
2 2 2 |
aaaACTTCAAtga aaAACTTCAatga aaaACTTCAAtga |
Created Created Created |
N N N |
-0.017 -0.001 -0.017 |
|||
149973412 | rs116605216 | C | C |
hsa-miR-1253 hsa-miR-6770-5p hsa-miR-7160-5p |
2 2 2 |
cctcagCTTCTCA cctcagCTTCTCA CCTCAGCttctca |
Disrupted Disrupted Disrupted |
N N N |
-0.073 -0.088 -0.173 |
T |
hsa-miR-4738-3p hsa-miR-539-5p |
2 2 |
cctCAGTTTCtca cctcagTTTCTCA |
Created Created |
N N |
-0.1 -0.054 |
|||
149973688 | rs12110324 | A | C |
hsa-miR-135b-3p |
0 |
aCCCTACAAttaa |
Created |
N |
-0.551 |
A |
hsa-miR-2909 hsa-miR-4775 hsa-miR-590-3p |
0 |
aCCCTAAAattaa accctAAAATTAA acccTAAAATTAa |
Disrupted Disrupted Disrupted |
N N N |
-0.195 -0.054 0.028 |