SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_001130918 |
---|---|
Gene Symbol: | TTLL6 |
Description: | Homo sapiens tubulin tyrosine ligase-like family, member 6 (TTLL6), transcript variant 1, mRNA. |
Gene Location: | chr17(-):46839592-46894469 |
Browse Associations |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr17:g.48762550G>A | COSN6657596 | CHC322T | [liver][NS][carcinoma][hepatocellular_carcinoma] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-1270 |
ttggtcttcATCTCCAaga |
1 |
CUGGAGAU | m7b | (m6b->m7b) | -0.117000 | -0.289000 | No effect | |
hsa-miR-1273f |
ttggtcttCATCTCCaaga |
0 | GGAGAUGG | m7a | Created | NA | NA | No effect | |
hsa-miR-139-3p |
ttggtcttCGTCTCCaaga |
0 | GGAGACGC | m7a | Disrupted | NA | NA |
0.020000 |
|
hsa-miR-143-3p |
ttggtctTCATCTCcaaga |
0 | UGAGAUGA | m7b | Created | no TS | -0.153000 | No effect | |
hsa-miR-3676-5p |
ttggtcttcATCTCCaaga |
0 | AGGAGAUC | m6b | Created | no TS | -0.113000 |
-0.010000 |
|
hsa-miR-4683 |
ttggtcttcATCTCCAaga |
0 | UGGAGAUC | m7a | (m6a->m7a) | no TS | -0.124000 |
-0.040000 |
|
hsa-miR-4770 |
ttggtctTCATCTCcaaga |
0 | UGAGAUGA | m7b | Created | no TS | -0.116000 | No effect | |
hsa-miR-620 |
ttggtcttcATCTCCAaga |
1 |
AUGGAGAU | m7b | (m6b->m7b) | -0.100000 | -0.237000 | No effect |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr17:g.48762670A>G | COSN1197888 | HCC98T | [liver][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
48762550 | rs2271890 | A | G |
hsa-miR-139-3p |
0 |
gtcttCGTCTCCA |
Created |
N |
-0.43 |
A |
hsa-miR-1270 hsa-miR-143-3p hsa-miR-4683 hsa-miR-4770 hsa-miR-6088 hsa-miR-620 |
0 |
gtcttcATCTCCA gtctTCATCTCca gtcttcATCTCCA gtctTCATCTCca gtctTCATCTCca gtcttcATCTCCA |
Disrupted Disrupted Disrupted Disrupted Disrupted Disrupted |
N N N N N N |
-0.172 -0.153 -0.124 -0.116 -0.125 -0.137 |