SomamiR DB 2.0 Somatic mutations altering microRNA-ceRNA interactions |
||||||||
Home | Search | Help | Download |
RefSeq ID: | NM_000113 |
---|---|
Gene Symbol: | TOR1A |
Description: | Homo sapiens torsin family 1, member A (torsin A) (TOR1A), mRNA. |
Gene Location: | chr9(-):132575220-132586441 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.129813653A>C | COSN6380819 | RK163_C01 | [liver][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-324-5p |
ggaaGGATGCataagtttt |
0 | CGCAUCCC | m6b | Created | no TS | -0.190000 |
-0.300000 |
|
hsa-miR-491-3p |
ggaaggaTGCATAAGtttt |
0 | CUUAUGCA | m8a | Created | no TS | -0.185000 |
-0.510000 |
|
hsa-miR-5196-3p |
ggaAGGATGAataagtttt |
4 |
UCAUCCUC | m7a | (m7a->m6b) | -0.303000 | -0.183000 |
0.120000 |
|
hsa-miR-586 |
ggaaggATGCATAagtttt |
0 | UAUGCAUU | m7a | Created | no TS | -0.071000 |
-0.180000 |
|
hsa-miR-664-3p |
ggaaggATGAATAagtttt |
3 |
UAUUCAUU | m7a | Disrupted | -0.011000 | no TS |
1.300000 |
Mutation | Mutation ID | Sample Name | Cancer Type | ||||||
---|---|---|---|---|---|---|---|---|---|
chr9:g.129813761G>A | COSN8316098 | TCGA-AN-A046-01 | [breast][NS][carcinoma][NS] | ||||||
miRNA Targets Table | |||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change | |
hsa-miR-30b-3p |
aagCCTCCCAaacacgcac |
0 | CUGGGAGG | m7b | (m6c->m7b) | no TS | -0.303000 |
-0.020000 |
|
hsa-miR-30c-1-3p |
aagcCTCCCAaacacgcac |
0 | CUGGGAGA | m6b | Created | no TS | -0.095000 | No effect | |
hsa-miR-30c-2-3p |
aagcCTCCCAaacacgcac |
0 | CUGGGAGA | m6b | Created | no TS | -0.095000 |
-0.030000 |
|
hsa-miR-3122 |
aagccTCCCAAacacgcac |
0 | GUUGGGAC | m6b | Created | no TS | -0.057000 |
-0.240000 |
|
hsa-miR-3676-3p |
aagcctcccAAACACGcac |
0 | CCGUGUUU | m7b | (m6b->m7b) | no TS | -0.093000 |
-0.190000 |
|
hsa-miR-3689a-3p |
aagCCTCCCAaacacgcac |
0 | CUGGGAGG | m7b | (m6c->m7b) | no TS | -0.293000 |
-0.570000 |
|
hsa-miR-3689b-3p |
aagCCTCCCAaacacgcac |
0 | CUGGGAGG | m7b | (m6c->m7b) | no TS | -0.272000 |
-0.140000 |
|
hsa-miR-3689c |
aagCCTCCCAaacacgcac |
0 | CUGGGAGG | m7b | (m6c->m7b) | no TS | -0.272000 |
-0.140000 |
|
hsa-miR-425-3p |
aagccTCCCGAacacgcac |
0 | AUCGGGAA | m6b | Disrupted | -0.190000 | no TS |
9.450000 |
|
hsa-miR-4728-5p |
aagCCTCCCAaacacgcac |
0 | UGGGAGGG | m7a | (m6b->m7a) | no TS | -0.121000 |
-0.470000 |
Mutation | Mutation ID | Sample Name | Cancer Type | |||||
---|---|---|---|---|---|---|---|---|
chr9:g.129813784C>T | COSN7557592 | 8016470 | [pancreas][NS][carcinoma][NS] | |||||
miRNA Targets Table | ||||||||
miR ID | miRSite | Conservation | miRSeed | SeedClass | FuncClass | Wildtype CS+ | Mutant CS+ | PITA score change |
hsa-miR-4641 |
cagggacCATGGGCgagga |
0 | UGCCCAUG | m7b | Created | no TS | -0.130000 | No effect |
Location | SNP ID | Ancestral Allele |
Allele | miR ID | Conservation | miRSite | FuncClass | Validation | context+ score change |
---|---|---|---|---|---|---|---|---|---|
129813011 | rs79201718 | T | T |
hsa-miR-4310 hsa-miR-5196-3p hsa-miR-7157-5p |
4 3 4 |
tgaggATGCTGAg tGAGGATGctgag tgaggATGCTGAg |
Disrupted Disrupted Disrupted |
N N N |
-0.092 -0.183 -0.098 |
A |
hsa-miR-516a-3p hsa-miR-516b-3p hsa-miR-670-3p hsa-miR-6787-3p hsa-miR-7162-5p |
6 6 2 5 6 |
tgAGGAAGCtgag tgAGGAAGCtgag TGAGGAAgctgag tgaggaAGCTGAG tgAGGAAGCtgag |
Created Created Created Created Created |
N N N N N |
-0.194 -0.194 -0.084 -0.226 -0.185 |